Gene Sden_0326 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0326 
SymbolradC 
ID4020342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp364641 
End bp365318 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content44% 
IMG OID637954307 
ProductDNA repair protein RadC 
Protein accessionYP_561344 
Protein GI91791693 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0170314 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCATTA AGGATTGGCC TCAAGGTGAA GGTCCAAGAG ATAAACTGCT GCAACAGGGA 
GCGGCGCGGC TTAGTGATGC AGAATTGCTG GCAGTGTTAA TTAGAAATGG CATCTCAGGC 
CAAAATGCAC TCACCACGGG ACGATTATTG CTCAGTCATT TTGGTGGTTT GCGCAGTTTA 
ATGACGGCGA CTGAGGACAA AGTATGTCAG ATCCCAGGTG TTGGACCGGT AAAATATGCT 
CAATTACAGG CCGCAGCCGA GATTTCTAAG CGAATTTCTC GTGAAAATCT ACAAAGAGGG 
CAAATTTTGA CAAATCCTGA TTTAACTCGG GACTATTTAA TGAGACAATT AGCAGACCGC 
TCCTATGAAG TGTTCGCCTT ATTATTGTTG GATAGCCAAC ATAGAGTGAT CCAATTTGTA 
GAATTGTTCC GTGGTACCAT AGATTCAGCC TCAGTTTATC CCCGTGAAGT GGTGAGCTTA 
GTGTTAGAAA AAAGGGCTGC GGCGGTTATC ATATGTCATA ATCACCCGTC TGGTATCGCT 
GAGCCCAGTC AGGCCGATAG GCGAATAACT GAGCGATTAA AAAATGCATT GGCAACTATT 
GATGTTTCTT TGTTAGATCA TATGGTTGTT GGTGATTTTG AAATAGTATC CTTCGCAGAG 
CGAGGTTGGT TAAATTAA
 
Protein sequence
MAIKDWPQGE GPRDKLLQQG AARLSDAELL AVLIRNGISG QNALTTGRLL LSHFGGLRSL 
MTATEDKVCQ IPGVGPVKYA QLQAAAEISK RISRENLQRG QILTNPDLTR DYLMRQLADR 
SYEVFALLLL DSQHRVIQFV ELFRGTIDSA SVYPREVVSL VLEKRAAAVI ICHNHPSGIA 
EPSQADRRIT ERLKNALATI DVSLLDHMVV GDFEIVSFAE RGWLN