| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0325 |
|---|
| Symbol | |
|---|
| ID | 4020341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 363316 |
|---|
| End bp | 364509 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637954306 |
|---|
| Product | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase |
|---|
| Protein accession | YP_561343 |
|---|
| Protein GI | 91791692 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0452] Phosphopantothenoylcysteine synthetase/decarboxylase |
|---|
| TIGRFAM ID | [TIGR00521] phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000385904 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAACAG GTAAGAAAAT TTTACTCGGG ATTGGTGGCG GAATTGCAGC CTATAAAGCC
GCCGACTTGA TCCGTCGTCT CAAAGAGCGC GGCTGCGACG TCCGCGTAGT CATGAGCCAA
GGGGCGCAGG CCTTTATTAC CCCACTGACC ATTCAAGCCT TATCGGGGCA CCCTGTGTCT
AGCGATTTAT TAGATCCCGC CGCAGAAGCT GGCATGGGCC ACATAGAACT GGCACGCTGG
GCCGATGCTA TGCTCATCGC TCCCGCTACG GCCAACCTTA TAGCACGTAT TAATGCAGGC
ATGGCCGATG AACTGATCAC CACCACGTGC TTAGCCACCA GCGCCCCGAT TATTTTATGT
CCCGCGATGA ACCAGCAGAT GTATCAAAAT CTAGCCACCC AAGATAACTT AGCCAACTTG
CAGCGCCGTG GTTTTCCCCT CTGGGGGCCA GCATCAGGTA GCCAAGCTTG CGGTGAAGTC
GGCCCAGGCC GTATGCTGGA GCCGTTAGAT ATTGCGCATA TGCTCGAACT ATTTTTTGCA
CCCAAACTAT TAACGGGTCA TAAATTGCTG CTCACCGCTG GCCCCACCCG TGAAGCCATA
GATCCTGTGC GCTATATCTC CAATCACAGC TCAGGCAAGA TGGGGTTTGC CTTAGCGAAA
GCCGCCGCTG AAATGGGCGC CGAGGTCACC TTAGTGGCGG GGCCGGTGAA TTTAGCCACC
CCTCATGGGG TCAAACGTAT CGATGTAGAA TCAGCCGAGC AGATGCTAGA GGCTGTCATG
GCCCAAGTGG ATGAACACAA TATCTTTATT GGCTGCGCCG CCGTTGCCGA TTATCGCATC
GCAACGGTTG CCACAGATAA AATCAAAAAA TCGGCTGAGC AAATGCAACT TGCGCTAGTG
CGTAATCCTG ATATCTTAGC CACGGTTGCT CAGCACAAGC CCAAACTCTT TACCGTAGGC
TTTGCCGCTG AAACTCAAGA TGTTGAGAAG TATGCTAGAG GTAAATTAGA GAAAAAACAG
CTAGATATGA TTGCAGCTAA TGATGTTTCT ATTCAAGGTT TGGGCTTTAA CGCCGATGAC
AATGCACTTG TGGTATTCGA TAAAGAATCC TGCCAGCATT TACCAGCAAC CAATAAACTG
ACCCTAGCCC GCCAACTACT GACACTGATA GAGCAAAAAT TAACAGCACA ATGA
|
|---|
| Protein sequence | MLTGKKILLG IGGGIAAYKA ADLIRRLKER GCDVRVVMSQ GAQAFITPLT IQALSGHPVS
SDLLDPAAEA GMGHIELARW ADAMLIAPAT ANLIARINAG MADELITTTC LATSAPIILC
PAMNQQMYQN LATQDNLANL QRRGFPLWGP ASGSQACGEV GPGRMLEPLD IAHMLELFFA
PKLLTGHKLL LTAGPTREAI DPVRYISNHS SGKMGFALAK AAAEMGAEVT LVAGPVNLAT
PHGVKRIDVE SAEQMLEAVM AQVDEHNIFI GCAAVADYRI ATVATDKIKK SAEQMQLALV
RNPDILATVA QHKPKLFTVG FAAETQDVEK YARGKLEKKQ LDMIAANDVS IQGLGFNADD
NALVVFDKES CQHLPATNKL TLARQLLTLI EQKLTAQ
|
|---|
| |