Gene Sden_0319 details

Gene Information

• Locus tag: Sden_0319
• Symbol: rph
• ID: 4020432
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 357751
• End bp: 358464
• Gene Length: 714 bp
• Protein Length: 237 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637954300
• Product: ribonuclease PH
• Protein accession: YP_561337
• Protein GI: 91791686
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0689] RNase PH
• TIGRFAM ID: [TIGR01966] ribonuclease PH

Plasmid Coverage information

• Num covering plasmid clones: 42
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCCCAA GTAAACGTAC GCCAGCACAA ACTCGCCCTA TCACTATTAC CCGTAATTTT 
ACTGCCCATG CTGAAGGTTC AGTGTTGGTG GAATTTGGTG AGACTAAGGT TCTTTGTACT 
GCGAGCTTCA CCGAAGGCGT ACCGCGTTTT CTTAAGGGCC AAGGCCAAGG TTGGGTAACG 
GCGGAATATG GCATGTTGCC ACGCTCGACT CACAGCCGTA TGGACAGAGA AGCCGCTCGT 
GGTAAGCAGT CTGGTCGTAC TCAGGAAATT CAACGTTTAA TCGGCCGTTC ATTGCGCGCG 
GCCGTTGACA TGAAGGCCCT AGGTGAAAAC ACTATCGTTA TCGATTGTGA TGTTATTCAA 
GCCGATGGTG GCACTCGTAC TGCGGCCATT ACTGGTGCTT GTGTGGCTAT GGTTGATGCA 
CTTAACTGGG CTCGCGCTAA GAACATTATC AAGTCTAACC CACTTAAGTT CCTTATTGCT 
GCTGTCAGTG TTGGCATCTA TAAAGGTGAA GCCATTAGTG ACTTAGAATA TCTAGAAGAC 
AGCGCGGCTG AAACGGATAT GAACGTGGTG ATGACTGAAA CCGGCAAAAT CATCGAAGTG 
CAGGGCACTG CCGAAGGTGA GCCATTCAGC CACGAAGAGT TAAACGAGTT ATTGGGTCTG 
GCGAAAAACA GCATTCGCGA GATCGTCGAT GTGCAGAAAA GCGCATTGAA TTAA 

 

Protein sequence

MRPSKRTPAQ TRPITITRNF TAHAEGSVLV EFGETKVLCT ASFTEGVPRF LKGQGQGWVT 
AEYGMLPRST HSRMDREAAR GKQSGRTQEI QRLIGRSLRA AVDMKALGEN TIVIDCDVIQ 
ADGGTRTAAI TGACVAMVDA LNWARAKNII KSNPLKFLIA AVSVGIYKGE AISDLEYLED 
SAAETDMNVV MTETGKIIEV QGTAEGEPFS HEELNELLGL AKNSIREIVD VQKSALN