| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0268 |
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| Symbol | |
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| ID | 4020399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 305861 |
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| End bp | 306547 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954250 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_561287 |
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| Protein GI | 91791636 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0557534 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAAAT GGAATTCAAT CAAGGCCATC GCCTTCGATT TAGATGGCAC GCTTATCGAC
AGCGTGCCAG ATTTAGCCGC GGCAACCAAC GCCACTTTAG CAGAGCTTGG CCTCGCAGAG
GTGAGTCAAG CTCAAGTGCG GTCTTGGGTC GGTAATGGAA CTCAGGCGCT GATGGAGAGG
GCCATTAGCT ATGCCTTGGG TCGTGAGGTA TCAAAAGACG AACTCAAACA AGCTATGGTG
CCGTTTCTTA TCCATTACGA GTATCATCTT GAAAAGCACA GTAGCCTTTA TCCCAATGTT
ATCGAGACCT TAACCGCATT AACACAGGCA GGCTTTAAAT TGGCACTCGT CACCAACAAA
CCCCACAAGT TCACCGTGCC ACTGCTACGT GCCTTTGGGC TGATAGAGTT TTTTGATTTA
GTGCTAGGCG GTGATTCGTT AGCGAAAATG AAGCCAGATC CACTGCCTTT AGCGCATGTA
TTAGCGACTT GGCAGATGCA ACCTGATGAA TTATTGATGA TTGGTGACTC TAAGAATGAT
ATTTTAGCGG CTAGAGCGGC CAAGGTGAGC TCAATAGGCT TGACCTATGG CTACAACTAC
GGTGAACATA TCAGCTTAAG TGAACCCAAT GCGGTCTGTG ATGACTTGGC TCAAATTAGT
GAGTACTTGC CTTCAGCCTG TGTGTGA
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| Protein sequence | MTKWNSIKAI AFDLDGTLID SVPDLAAATN ATLAELGLAE VSQAQVRSWV GNGTQALMER
AISYALGREV SKDELKQAMV PFLIHYEYHL EKHSSLYPNV IETLTALTQA GFKLALVTNK
PHKFTVPLLR AFGLIEFFDL VLGGDSLAKM KPDPLPLAHV LATWQMQPDE LLMIGDSKND
ILAARAAKVS SIGLTYGYNY GEHISLSEPN AVCDDLAQIS EYLPSACV
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