Gene Sden_0268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0268 
Symbol 
ID4020399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp305861 
End bp306547 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content48% 
IMG OID637954250 
Productphosphoglycolate phosphatase 
Protein accessionYP_561287 
Protein GI91791636 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0557534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAAAT GGAATTCAAT CAAGGCCATC GCCTTCGATT TAGATGGCAC GCTTATCGAC 
AGCGTGCCAG ATTTAGCCGC GGCAACCAAC GCCACTTTAG CAGAGCTTGG CCTCGCAGAG
GTGAGTCAAG CTCAAGTGCG GTCTTGGGTC GGTAATGGAA CTCAGGCGCT GATGGAGAGG
GCCATTAGCT ATGCCTTGGG TCGTGAGGTA TCAAAAGACG AACTCAAACA AGCTATGGTG
CCGTTTCTTA TCCATTACGA GTATCATCTT GAAAAGCACA GTAGCCTTTA TCCCAATGTT
ATCGAGACCT TAACCGCATT AACACAGGCA GGCTTTAAAT TGGCACTCGT CACCAACAAA
CCCCACAAGT TCACCGTGCC ACTGCTACGT GCCTTTGGGC TGATAGAGTT TTTTGATTTA
GTGCTAGGCG GTGATTCGTT AGCGAAAATG AAGCCAGATC CACTGCCTTT AGCGCATGTA
TTAGCGACTT GGCAGATGCA ACCTGATGAA TTATTGATGA TTGGTGACTC TAAGAATGAT
ATTTTAGCGG CTAGAGCGGC CAAGGTGAGC TCAATAGGCT TGACCTATGG CTACAACTAC
GGTGAACATA TCAGCTTAAG TGAACCCAAT GCGGTCTGTG ATGACTTGGC TCAAATTAGT
GAGTACTTGC CTTCAGCCTG TGTGTGA
 
Protein sequence
MTKWNSIKAI AFDLDGTLID SVPDLAAATN ATLAELGLAE VSQAQVRSWV GNGTQALMER 
AISYALGREV SKDELKQAMV PFLIHYEYHL EKHSSLYPNV IETLTALTQA GFKLALVTNK
PHKFTVPLLR AFGLIEFFDL VLGGDSLAKM KPDPLPLAHV LATWQMQPDE LLMIGDSKND
ILAARAAKVS SIGLTYGYNY GEHISLSEPN AVCDDLAQIS EYLPSACV