| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0262 |
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| Symbol | |
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| ID | 4020373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 300680 |
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| End bp | 301753 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637954244 |
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| Product | 3-dehydroquinate synthase |
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| Protein accession | YP_561281 |
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| Protein GI | 91791630 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0337] 3-dehydroquinate synthetase |
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| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00142699 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACAGA TCCAAGTCAA TTTAGGTGAC AGAAGTTATC CCATACACAT TGGCTTAGAT
CTGTTAAAAC AGCAGCAGAC CTTTCAATCG CTTCAATCCA AGAAAGTCTT CATTGTCACA
AATGATGTTG TCGCGCCTTT GTACTTAACT CAAGTCAAAG CCGCGTTGGC AGATTGTGCC
TCTGTGGACG TTTTTGTGTT GCCTGATGGT GAAAAAAATA AAGATTTAGC CCATTTAGAG
CAGATTTTTT CGGCGTTATT AGAAAAAAAC TACGCTCGGG ATACCACATT GCTGGCCTTA
GGTGGCGGTG TGATTGGTGA TATGACAGGC TTTGCCGCCG CATGTTATCA AAGAGGGGTG
CCTTTTGTTC AAGTTCCCAC AACCTTATTA GCGCAAGTCG ACTCCTCTGT CGGTGGAAAA
ACTGCGGTTA ATCATCCCTT AGGTAAGAAC ATGATTGGGG CATTTTATCA GCCTCAATGT
GTGATTATCG ATACCCAGTG TTTACACAGT TTGCCTAAAG CGGAGTTTGA CGCAGGTATG
GCTGAGGTGA TCAAATACGG TATCATTTGG GATGCCGAGT TTTTCCTCTG GTTAGAAAAC
AATATCGCAG CACTTAAGGC GTTAGATACG CAGGCGCTGA CTTATGCTAT CGCCAAATGT
TGTGCTATTA AGGCCGATAT TGTGTCTCAA GATGAGACAG AGCAAGGTGT GCGGGCATTG
TTGAATTTAG GTCATACTTT TGGCCATGCT ATTGAAGCGC AAATGGGTTA TGGTAATTGG
TTGCACGGTC AAGCGGTTGC CGCAGGAAGT GTGCTGGCGG CCAAAACTGC CTTAGCGCTG
GGTCTATTGG ATGCTCTCAG CGTGCAAAGA ATAGAAAACC TCTTTCGTGC ATTTGATTTA
CCTATTGATG GGCCGCAAAG CATGGCGTTT TCTGACTATA TGCGACATAT GCGCCGGGAT
AAAAAGGTAC TGGCGAGTAA AATTAGGCTG ATATTACCTC AAGCCATAGG CCAGGCTGGA
ATTTATAGTG ATGTGGATGA AGCCTTATTA GCGCAGGTTA TCAACCCGTC TTAA
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| Protein sequence | MQQIQVNLGD RSYPIHIGLD LLKQQQTFQS LQSKKVFIVT NDVVAPLYLT QVKAALADCA
SVDVFVLPDG EKNKDLAHLE QIFSALLEKN YARDTTLLAL GGGVIGDMTG FAAACYQRGV
PFVQVPTTLL AQVDSSVGGK TAVNHPLGKN MIGAFYQPQC VIIDTQCLHS LPKAEFDAGM
AEVIKYGIIW DAEFFLWLEN NIAALKALDT QALTYAIAKC CAIKADIVSQ DETEQGVRAL
LNLGHTFGHA IEAQMGYGNW LHGQAVAAGS VLAAKTALAL GLLDALSVQR IENLFRAFDL
PIDGPQSMAF SDYMRHMRRD KKVLASKIRL ILPQAIGQAG IYSDVDEALL AQVINPS
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