Gene Sden_0258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0258 
Symbol 
ID4020369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp296647 
End bp297267 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content38% 
IMG OID637954240 
Productpilus assembly protein, PilO 
Protein accessionYP_561277 
Protein GI91791626 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTCG ACCTTGAACA GTTTAACGAT ATTGATTTCG AAAACATTGG TGGCTGGCCA 
AAATTAGTTA AGTTGGTTTT TGCTGCCATA CTTTCGGTAG TGGTGCTTGC GGGCAGTTAT 
TATTTATTTA TTTCCGATGC CATAGATACC CTTTCTTATG AGCAAAATGA AGAAATTAAA 
TTACGCCAAG ATTTTGAGAA TAAATACCGA TTAGCAGCTA ATCTAAAATT ATACCGAGAA 
CAACTAGTGG TAATGGAAGC GCAGTTCGCT GAGTTATTAA AAATGTTGCC CTCGGAAAAT 
GAAATGCCAG GATTACTCGA TGATCTTACT TTTGTTGCCA CAGATGCAGG CCTTAAGATC 
ACTAGCCTAG ATTGGGAGGC TGAAATCGAG CGTGACTTTT ATATTGAATT TCCTATTAAG 
ATGACAGTGA ATGGTAATTA CCATGAAATC GGCGATATGG TCAGCGCCGT AGCCAAATTG 
CCACGTATTG TCAGTTTGCA TGATTTTTCA ATTGTAAAAG ACGAGTCTGG CGAATTATCA 
ATGAATATCC TAGCCAAGAC CTATCGATTT AAAGAAGGGG CCGAACTACC CAAAGAATTA 
CCTAAGGCTA AGGGGAAATA A
 
Protein sequence
MNFDLEQFND IDFENIGGWP KLVKLVFAAI LSVVVLAGSY YLFISDAIDT LSYEQNEEIK 
LRQDFENKYR LAANLKLYRE QLVVMEAQFA ELLKMLPSEN EMPGLLDDLT FVATDAGLKI 
TSLDWEAEIE RDFYIEFPIK MTVNGNYHEI GDMVSAVAKL PRIVSLHDFS IVKDESGELS 
MNILAKTYRF KEGAELPKEL PKAKGK