| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0252 |
|---|
| Symbol | |
|---|
| ID | 4020363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 288504 |
|---|
| End bp | 289409 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637954234 |
|---|
| Product | ornithine carbamoyltransferase |
|---|
| Protein accession | YP_561271 |
|---|
| Protein GI | 91791620 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0078] Ornithine carbamoyltransferase |
|---|
| TIGRFAM ID | [TIGR00658] ornithine carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACT TATTATCGAT AAAAGAATTT ACTCAACCTC AGTTGTTAGC GTTACTTAAA
TTGGCAAAAG AGATCAAGGC GCAGCCTGCT CAATATCGCC ATGCGCTAGC GGGAAAAAGC
ATAGTGATGT TATTTGAAAA ACCCTCACTG CGAACCCGAG TCAGTTTCGA TATCGGTATT
AATAAGCTCG GCGGCCACTG CCTGTATTTA GATCAGCAAA ATGGTGACAT AGGTAAGCGT
GAATCTGTGG CAGACTTTGC CGCTAATTTA TCTTGCTGGG CCGATGCGAT AGTGGCCCGT
ACTTACCGGC ATAGCACAAT TGAAAAGCTG GCTAAATATG GCTCAGTGCC TGTGATTAAT
GCCTTGTCTG ACTTGTATCA TCCTTGTCAG GCATTGGCGG ATTACCTTAC CTTGGCCGAG
CAGTTTGATG ATTTAAGTCA AGTTAAGCTT GCCTATGTGG GCGATGGCAA TAATGTGACT
CACTCCTTAC TGTATGGCGC CGCCATTCTT GGCATGACAA TGACAGTGGT GTGTCCAGAA
GGTCACTTCC CTGATGGCTT GATAGTCAGT GAAGCCCAGG CATTAGCCGA ACAACATGGC
GGCAAGATAA TACTCAGTAC TAATATTGCT GAGTTATCTG ACCAAGATGC CATCTATACT
GATACTTGGA TCTCCATGGG TGACAGTACA AACTTAGATG ATATCAAACA AAAGTTTGCC
AAGTTTCAGG TAAACAAAGC CTTGATGTCA AAAGCCGGCG CCCGCTATTT TATGCACTGC
TTGCCAGCCC ATCGCGGCGT AGAAGTGACA GATGAAGTCT TAGACGGCGA AGGCTCCTTG
ATCTTAGTTC AGGCTGAAAA TCGCATGCAT GCACAAAATG CCTTGCTGGT GAGTCTACTT
ACCTAA
|
|---|
| Protein sequence | MKHLLSIKEF TQPQLLALLK LAKEIKAQPA QYRHALAGKS IVMLFEKPSL RTRVSFDIGI
NKLGGHCLYL DQQNGDIGKR ESVADFAANL SCWADAIVAR TYRHSTIEKL AKYGSVPVIN
ALSDLYHPCQ ALADYLTLAE QFDDLSQVKL AYVGDGNNVT HSLLYGAAIL GMTMTVVCPE
GHFPDGLIVS EAQALAEQHG GKIILSTNIA ELSDQDAIYT DTWISMGDST NLDDIKQKFA
KFQVNKALMS KAGARYFMHC LPAHRGVEVT DEVLDGEGSL ILVQAENRMH AQNALLVSLL
T
|
|---|
| |