| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0221 |
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| Symbol | |
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| ID | 4017941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 240144 |
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| End bp | 242276 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637954197 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561241 |
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| Protein GI | 91791590 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTGGAGC CAACCAGTTC ATTGGTTTTT GTAAACAATA ATATCGAATT AGATCTTACT
TGGTCTCAAC TTAGGGCTGT GCATCCTGTC CATATTCAAT ATTTGAAAAA TTTAGCTGTT
GAAGCCTCTT TCAGTGTCTC CCTTGTGTGT AATGGCCAGC TATGGGGATT ACTAGCCTGC
CATAATATGA CTGCTAAATA CCTTTCATTT GAAACCAGAC AACTATGTGA GGAATTATCA
CAAATTACCA GTTTGCACAT GTCTGGATTA CTCAGAGCCG AAATTGATTT TCAGCGCTAT
CACTACAAGG TGGAGTTTGC CGAGATACGA GGTGCAATGC AGAGCAGTAT AGATGCGTTT
AAAGCGATCA AGAGTCAAAT ATCTGAAATT AAAACGTTAC TCAATGCTGA TGGAATTTGG
CACCACATAG ATGGGGAAGA TTATTATCAT GGTCAAGTTC CAGATGAGTT GAGTTTGAGT
TTATTAGGCA ATTGGTTGGC GCAATTTGAT CGCCACCAAG TGATGTCGAG GCACACAGTT
GTTGAGGATT TTAAGCAGAA CAAAGCCTTA GTCAAATTTG CCAGTGGATT ACTGTTTTTA
CCGCTAAATC AGCAAAACTT TATCGTACTA TTTCGCCGTG AAGAAATAGA GACTGTAAAT
TGGGCTGGTA AACCACAAAG TCACAATGAA CAGGACATGT CTACCAGTGC GTTGACACCG
AGAAACTCTT TCTTGACCTG GGCCGAGGTC ATGGGAGGGC AAGCTAAGCC GTGGAACTTG
ATTGATATTG AAATGGCTGA AGACATTCGT TGTGAACTCG TCCGGCTGAT TGAAAAAAAT
CAATTAGAAA TAATAGCCTT AAAAGATCCA CTTACTGGAA TCGCAAATCG ATTAATGTTT
GAAAGAAAGC TCAAATCAGC ATTACAGCAA GCCTTGGAGG CTAACCAGCA GTTTGCGATT
TATATGATTG ACCTAGATAG GTTTAAACCA GTCAATGACA CTTATGGTCA TGCTGTTGGT
GATGAGTTAC TCATTCAGGT CACCCAAAGG TTGCAGGCCT TGCTTAGGTG TGAGGATATG
GTTGCAAGAT TGGGTGGCGA TGAGTTTGCT GTCATCCAGC TGGGGATCAG TAATAAAGGT
GATATAGAGA GAATAGCCAA GTTGATGGTC GAAGAGGTCA AGCGACCCTT TTTGATTGAA
GGAAAAAATA TTGAAATTGG TGCCAGTATC GGTATCACAA TTTGCCCGCT CGATGCCATA
AGCCAAACTG AACTGCTCTT AGGGGCTGAC TTAGCCTTGT ATGAAGTGAA AAAAAGTGGT
CGCAATGGCT TTAAACACTT TGAGCCTAGT ATGTTGTTAG AGAAAACTAA CGATGAAAGC
ATTAGGAATC AATTATTGCG GGCTTTTGAA AATAAAGAAC TTGAGATGGT TTACCAGCCA
ATTATCGACA GTCGTTCAAA GAAAATTGTT GGTTTAGAGG CTTTTACGCG TTGGCAACAC
CCAGTTCTTG GGTTTATTGC TGCACAAGAA TTTGTCAGTG CGATAGATAA AAATCACCTT
AATCCTGAAT TTGTCGATTG GATGCTAATG ACGACATTTA GTGACTATCA ACAATGGCAA
AGGCAGGGGA TTGCGTCTAT TCCTGTGAGT ATTAATTTAC GTTCGGATCA ATTTCTGTCA
TTAGATATTG AAAATAAATG TCGCGCTTTA AGTCAGCAAT ATCAAGTCGC GACAACTTGG
CTGAGAATAG ACTTAGATGA ACCTACACTG GCAATCGATG CTAACCGCAG TGAAATTAAA
ATTAATGCCT TAGCCCAGCA TGGGATTCTA TGTAATATCG ACCACTTCGG GCAGGGGCTA
TTATCACTTA AACAACTCAC TAAGTTGAAA GTGAACAGTC TAAAAATTGA TAGCCGTTTA
CTAATGGATG ATAAGAAAAA CATTAAAACT CAAGCTCTGG CGACTATTTT AAAAGCCATC
GGTGAGGTGA TGAATGTACC AGTTGTGGCC ACTAGAGTTG AAAAGCAAGA AGTCATGGCC
AAGGCCAAAT CAATGGGGAT AAATCTAGTG CAAGGGTTTG CCATTATAGA GCCCATGTCT
GTGGCTGATG TGTCAGCCTA TATGACGAAG TAG
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| Protein sequence | MVEPTSSLVF VNNNIELDLT WSQLRAVHPV HIQYLKNLAV EASFSVSLVC NGQLWGLLAC
HNMTAKYLSF ETRQLCEELS QITSLHMSGL LRAEIDFQRY HYKVEFAEIR GAMQSSIDAF
KAIKSQISEI KTLLNADGIW HHIDGEDYYH GQVPDELSLS LLGNWLAQFD RHQVMSRHTV
VEDFKQNKAL VKFASGLLFL PLNQQNFIVL FRREEIETVN WAGKPQSHNE QDMSTSALTP
RNSFLTWAEV MGGQAKPWNL IDIEMAEDIR CELVRLIEKN QLEIIALKDP LTGIANRLMF
ERKLKSALQQ ALEANQQFAI YMIDLDRFKP VNDTYGHAVG DELLIQVTQR LQALLRCEDM
VARLGGDEFA VIQLGISNKG DIERIAKLMV EEVKRPFLIE GKNIEIGASI GITICPLDAI
SQTELLLGAD LALYEVKKSG RNGFKHFEPS MLLEKTNDES IRNQLLRAFE NKELEMVYQP
IIDSRSKKIV GLEAFTRWQH PVLGFIAAQE FVSAIDKNHL NPEFVDWMLM TTFSDYQQWQ
RQGIASIPVS INLRSDQFLS LDIENKCRAL SQQYQVATTW LRIDLDEPTL AIDANRSEIK
INALAQHGIL CNIDHFGQGL LSLKQLTKLK VNSLKIDSRL LMDDKKNIKT QALATILKAI
GEVMNVPVVA TRVEKQEVMA KAKSMGINLV QGFAIIEPMS VADVSAYMTK
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