| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0197 |
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| Symbol | |
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| ID | 4017917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 210339 |
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| End bp | 217580 |
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| Gene Length | 7242 bp |
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| Protein Length | 2413 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954173 |
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| Product | Rhs family protein-like protein |
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| Protein accession | YP_561217 |
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| Protein GI | 91791566 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTAAGC AATGGACTGT GTTTATTACA GCACTCTTTT TATTATTTAG CAGCTTCACT
AAAGCGGACT TGAATAGTGA TTATAGAAAC TATCAGGTGT TCACAGATCA AGCCGGTAAT
CTGGTATTAA GAGTCCCTGC GACTTTTGTT CTCATTGCTT CCGATATCAA TATTCCACTC
AATATCACTC CTAAAAATGG GGTATTTAAA CTCATTCAAA ACGGCAATAC TTGGTCATTA
ATACCCATGA CCCAGGGTGA GTTCGACAAT TTATCATTAA CAGCGGCAAG TCATATTCGA
TTAGAGTTTC AGGATATCGA TGGGGATGGC GTTAATGACC TGATTGTTCG CGATGTGAGT
GGCAATAGAG ACAGTTTTAT CGTCAGTAAT TTAACTGGTA CAGCCAATGT TGATGCCTAC
AGTTTAGCGC GCAATGGCAT AGATCTATCT CAAGGTAGTG CACTGTCGTT TAAAGATATC
AATGGCGATG GGATAAAGGA CATTATAAAG GATGAGAATA CCAGTTCTGC AACCACGTAT
TTAGGTTCAC GTTCAGGCCG CCTCATCGAT ACTTCGGGCA CTGATGCATT TACAAATCCA
GGTAACGTTA TAGGCTTAAC TGCTGGTCAA TTTAAAGTGA CAGAATCAGG GGCTGCGACC
TACAGTATTC CCTTAAACCT CCCCCCAGCG ACAGCAGGTG TAATGCCGCA AGTTGGTTTG
TCCTATAACA GCCAGGGCGG GGAAGGCATA TTGGGTATGG GCTGGAATAT CTCTGGGTTA
TCAGCTATTG CGCGTTGCCC AAAAAGTATC GCAATCGATG GGAAAATCGA AGGGATTAAA
TATAACACCA GTGATGCGCT TTGTTTTAAT GGCCAAAGAT TAATGTTAAA TGCCAACAGT
ACAAATGAGT ATCACACCGA AATTGACAAT TTTAGTGTCA TCACTGCATT TAATGGCACC
AATGGTCCTG AATACTTCAC GGTAACCACT CAATCTAATG AAACACACTA TTATGGTAAA
GCCCCTAACA ATATATCTAC CTCTGAGGAT GCCTATGTAG AACGTGGCGG TTATGCTGCT
AAATCGGCGG CAAAGCTATG GGCGCTTAAA GCGATTGTCG ATAATAAGGG TAACTACATT
CGCTATGATT ACATAAAAAA TGTGACCAAA GGCAGTCATA TACTCAATAG CATTGCCTAT
GGCGGAAATG AAACATTAGC CACTGCACCA TACAATAGGA TTGAATTTAT CTATACCGAT
GTCGCACGTT CGCTCGAAGG TTATTCTGAC GGCGGTATTC TCACTAATAA TAAAAGATTA
AAGCAGGTCA TAGTCAAACA AGACTCCGAC GTTTTCCGCT CGTATAATTT TACTTGGCTG
CTTACCTCTA TCCCTGAAGA ACGAAATTAC GTCACTGGGA TACAAGAATG TTTCAATGAA
AGTAATACAG ATTGTCTCCC TGCTACTAAA TTTGAATTTG AACAACCAGC AAGAAAAATA
CCAACTTCCA CTTATAAAAT GTGCAGGATA AATGCACCGG CAGAACAAGC TATTTGTACT
AGTGTTAATT ATTGTGATGC CACTAGTAAC GGGTCCGGTG GCTGGTGTGA GGTTAACTAT
AATACGCCAG ATATAGCGCC TTTTGAGAGT GCCTCATACG GTGCTGCTGC GAGTAACGCT
GATAGATATT ATGCCCAAGT CTTAGATTTT AACGGCGATG GCTATGCCGA TATGCTGTTC
CCCAAGGATG GCAAATGGCA CTATTACACT ACAGATTGGC AAGTGACCAC GACCGAATCT
TTGATTAACA TCCCTGAAAG GTTTAAGAAG AATTACCTTT CTAGTGACCC CACTACGCGA
AGTATTAAGA CCAGTACTAT TAGTAATAGC ACCCAAGTGA TCAGCGGTGC CAGCATAGGT
GAAAAAGGCT ATGCCAGAGT GATTGATTAC AATGGCGATG GCAAACAAGA GTTACTAATC
CCTATTGCCT CAGGTTATTG GCATATTCTC AGTTCAGACT CTAGCACTAG TGAGCAAACG
ACATGTGAGC CTCAACCTTA CCCCGCTCCG CCTATCTGCG ATACGCATAC GATAACTAAT
AAGTTCACCT ATACATCCTT AGGTATATTA GCTAAAGATT ATGAAAATGC CGTAGTCGCT
GACGTCGATG GTGACGGGCT GCAAGATATC GTCTTCAATT CTGGATCTTC GCTTAGCTAT
TACCATAACT TAGGTGGCTC GTTTTCAGCT GCAAAGTCTA TATCCCTAGA CATGCCAGCA
AGCTTTAGTG GCGCAACCGC TTATGAGGCC TATGGTAATG ATATTGTCAG AACGTCGGCC
AATATAAAAA ATTCGGCGAT GATTGATGTT AATGGTGATG GCCTTACCGA CATTGTGATA
AAAATGCGTA AAATTACCAC AAATCCACCG CCACCAGGCT GTTATGATCC TAGAATGCTT
GCGGTCGCAG CGGTAGAAGA TGATGAAGCC GCAGAAAGGT GCAGAGAAAC CATCACAGTA
GATTACGGAA CCTATGCATT CATCGCTTCG GTAAATGCGG GGCAGGTTAG CTACACAGCC
ACAGACAACA GCTACCTAGG TGCCACATTA AAAGCCATGA GAGTGGCCGA TTTTAATGGT
GATGGCTTAA CGGATATTGC ATATATTGCC TCCGACCGAT GGTATTACCG TTTATCAAAA
GGCAACGGCA TTTTTACCAG TCCAAAAGCG CTCAACGGAA TAGATGCTAA AACGGAAAGC
ATCTATAACC GTCACCAGTT TGTTGATTTA GATGCCGATG GAAGAAGCGA TATACTAGCG
GCTACGACAA GCAAAAATTA TACAATTTTT CTCTCAGGTC CCAGTGAAAC CACAGAAAGC
GCGAATTTTA TCAAGCGTGG CACGCTGCCC GTTGGTACCA GTACCACCCC TGAAGAGACC
GCCTTGCGTC TTGCGGATGT CGATGGCGAT GCAAAGTTAG ATTTGCTAAC CGCATCATCG
AGCACTGGCA CTTGGAAGGT GCAAAAAGCC ACTCGTCCAT ATATCAAAGA ACATGTGCTG
ACTAAGATCA CCAATGCCTT TGGGGTGCAG ACTAAAATAG CCTATGCACC ATTAAACAGT
GGCGTACCCT TGATTAATCT TGAATCAAGC CAAAAGCCAA ATGATAAGGA TTACATTACC
CCGATAGCGG GAATGTACGT GGTGACCGAA GCGGCGACTC AGTCAACCAG TACTGAATCT
GTCTTAGTGC AATATGCCTA TGGTGGCCCC TTAGCCCATA AGAAAGGCCG TGGCTTTTTA
GGGTTCGAAA CAGTAAAAAC CACTGACCCA CAATCGGGTG TCGTCACCAC AACTCAATAT
CATCAATTGC ATCCGTTGAC AGGCATGCCG AAAACCACGA CTCGTAAGTA CCAAGATAAC
CTACTGAGCA GTGCAACTAA CACTTATGCA CAAGGCACCA GTGCTAATGG TGGCCGACAT
GTATATTTAA AGAGCTCAAC CGAAGCCAGC TACAGTATCG ATTTATCTAC CGACGGCATC
ACAGCTACAG ATCATAAAAA AGTCGCAGAA ACCATTACTA CCAATACCCA TGACAGCTGG
AATAACCTGA CTCAAAGTAT TGTGGACGTC AAAGATGCGG CGGGTAGCCT AGTACACAAA
ACTCAAACGG ATAACACCTA TTCAAGTTCG GCCTATGGGA TTATTAGCAC AGATGCCATA
GCGTTAGAGC GCAGCCACAG TCAGCAAGAT GTTCAGGCGG GCACTCAGCC CGATGCCAAG
CAATTTGGCC GCCTGTACAC CACCCAAGTG AAGAAGACCC GCTATAAAGA TACCGCCAGT
GGTACGGCAG AATCACAAAC ACGTAACACT AAGTTTAGCT ATTACCCGAA CGGCATGTTG
CGCGAATCCT TTGTTGATGG CCTGAATACT GCCTTTTTCT ACGACAAATA CGGTAACAAG
GTAGCCGAGC AAAGTTATGC TAAACACAAT GCGGTTAGCT ATCAAAAGCG CGGCCAGTAT
TGGTTTTATG ACAGTCGCGG CCAGTACCTA GCAAGGCAGA TGAATCAAAA TGGCGAGTCT
GAAACCTATC TGCTTAACGG TAAATCAGCC AGCACGGCCA CCTTGGGGCT TATTTACAGC
AAAACCACCA CAGGGCCAAA TAAATTAGCC TCAACCAGCT ATTTCGATAT TCAGGGCCAA
GTAGTGCGCC AACTGCTGGC GGACGGTAAC TACTCAGAAA CCAGTAAGAC CCTCTGTGAA
AGTTGCGTTG AAAATTACAT TACCGAAACC AACAGCAGTA GCAATAAACC GCAAACGGTG
AATTACTTCG ATAAGTTTGG TCGCCAGCGC CAGCAGCGCG TTAAAGGTTT CGATGGCGCC
TGGATAGTCA CAGCCTCAAG CTACGACAAG TTAGGCCGTG TCACCCATAG CAGTGTGCCT
AACTATGACA CTGCGTCCGC GGTTAAGTCA CAGCAATATT ATGATGCCCT AGGGCGAGTC
TATAAGCAGA CTAAACTCAC CGAAACCGGC ACAGTCACGG TTTACAGTAA GATTGATGGC
TTAGAGACCA CTTCAATAGA TGAAAAAGGG CTGCAATATA AAGATATCCA CAGCGCCGAC
GGTCAGCTAA TTACGCGTAT TGATCCGCAA GATCAAACGA TTAGCTACTA TTACGATGCC
TTTGGCAATG CCCGTAAAGT CACCACTAAG GCAAAAGATA AGAATAATGC CTGGAAGACG
CAATCAATCA CCACAAACTT CGATGCATAC GGCCGCAAAA TGGCCACCAA CGACCCAGAT
AAGGGGAGCT GGAGCTATGG CTACAATGGT TTTGGTGAGC TAATCAGCCA GACAGACGCC
AAGAGTCAAA CCACCACCAC AGAATACGAT GCCATGGGGC GCATGCTGTG GCGCAGAGAT
AATAGCGATC TCTCCTGTTG GAGCTATGGC AGCGATGCCA CTAAAGGCAA TGTCGGTAAA
CCCACAGGGG TTAAGCAGTG GGCGGCGCAA ACCAGTTGCA CCACCACGAG CGCGGTGCAG
AGCAGTGAAA CTTACCATTA CGATGCCTTT GGCCGTCCGG CTCAGGTTGA TTACACTATC
GATGGCGCAA GTTACAGCAC TCGCAGTGAA TATAATACCA AGGGGCAGTT GAGCCGCCAG
CATTACCCTT CTAATAATGG GGTGTTTTAC GTTAACTTTT ACTATAACGC TAACCATTAC
CTTTACTTGC AAAAAGACAG CGCGGATCGT GAGTTACGCA GAATAACCGC CATGGATGCC
CTCGGGAATA TCACGGCGCA AAGCTTTGCC AACGGCACCA GTGAGGCGCG CCGCTTTAAC
CAGCGCACGG GCCGCATAGA CAGTATCGAT CTCAAGAAAG GCAATAGCTA CATTCATCAG
CTAAGTTATG GTCTTTTTGA TGCCAAAGGC AATGTCGAAT ATCGCTCCCA CAGCTATTAC
AATGGCAGCG GCATTCAAAC CTTGGGCTTC AGTGAAAACT TCACCTATGA CAGCTTAAAC
CGCATCGAAA CCCGCGATCT CAGTATTGGC ACTGGCAGCC TCACGGGCTA TGGCTATGAT
GAGCAATACA GCTACGATGG CTTCGGTAAT ATCAACAGCC GTAAAGGCTA TGCGGGCGGC
AGTTATTCGG TCAATCTCGC CAGTTATAAT TACCTGCAAA GCACCAGTGT CAACCGACTC
GACAGCGCCA ATGTCGATGG CAAAAGCTAT AGCAAGTTTA TCTATGATGC CAACGGCAAT
ATCACCTCAG ATGGCAGCCG CAGCTTTAGC TACAATGCCT TCGATAAGGC CAGTCGCATT
CAGCTAGGCA GCCAATACAG CGCCTATCGC TATGACAGCA GTCGCGCAGT ATTGAGCCGC
AGCGATTATC GCCAAGAGGC GGGCGAGTGG AAAACCTTTA ATACCGATTA TATCGGACAG
TTGTACCAGC AAGAGCGCCG CTATAAGGGC AGTGCAGCCA TAGGCAGCAA CCTGGAAAAT
ACCCGTCACA AGTATATGTT GGGTAATATC ATGGTGGTGC GCAACCAAAA TGCCACCTTA
GGCAACAGTG AACAGGTACA GTATCAGCAT GGCGATCATC AAGGCTCAAC CTTAAGCATC
ACCGATGAGC GCGGCAACAT ACTCGAGCAG TACTTCTATA GCGCATTTGG CAAACCGATG
AAGCTTGCTG GCTCCAGCCT AGTGCAGGCC ATCACGCCCA TGGAGCGCGG CTATACTGGC
CATGAGATGT TACCCAATCT GGACGTGATC CAGATGGGTG GCCGTATCTA CGACCCTAAC
TTGGCGCGTT TTTTACAGGC AGACCCCAAC ATACAGGCAC CGACTAACCT ACAGAACTAT
AACCGTTATA GCTATGTGCT CAATAACCCG CTGACTTATA CGGATCCGAG TGGTTACTTT
TTTGACAAAA TATTTGATTT CGTTAAGAAG TACTGGAAAG TGATAGTGGC AGTAGTGGTA
GTTGTTGTGA CCTATGGCGC TGCGACTAGT TGGGTTGCAT CGTGGGGCAC TACTGGGGCG
TTTGGAAGTG CGGCAACAGC GGCTACATCA GCAACATTAA CGACCGCAGG AGCTGTCGCT
ACTGGAGCTA TTGCGGGGGC CGCGGGTGGG TTTGTTGGAG GAGCTTTAGC GACAGGTAGC
CTTAAAGGGG CGTTTCGTGG GGCCTTAACA GGTGCCATTT CAGGGGCAGC TGGTGGCTAT
GCAAATGCAG GTGCTGTGAG TGGTTGGGGA GATGCGGCCA AACGTATCGC AGTGGCCGCT
GCAGGTGGAT GTGGTGCAGG TAAAGCTTCT GGTGGTTCTT GTAGCCAGGG GGCTAAGTTG
GCTGCGGTAT CACAGGCGAT AACTATGGGA GCTGGTGAGT TATATCGAAA AGTAAGTAGC
CAATATAACA AAACAGGAGA ACCGCATTTA CTACAAGAAG GTATAAGCGA TGTTGGAAAG
CAGGCTAGAG TAATTCATGA ACCTCATTTT TGGGGGCAAT CAGATCAGGC AGGATTAATG
AAGTCAATTG CAAAAGGCCC TTACATGGAT GCATTTGCGG AATTTCATGA TGGGTTGCAT
GAATATTTAC ATGACTCTTT GGGTAGTTAT GCATTTTTAT CCGATAATTC TGCATCTCTT
ATTCTTACAA TGCCCCCTTC ATATGTACTT ACAGTAGCTG CTGCTGCGCG ACCATATTCA
CACTTATATT CTTTAGATTT AATGAGAGAA GGTAAAAGAT GA
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| Protein sequence | MCKQWTVFIT ALFLLFSSFT KADLNSDYRN YQVFTDQAGN LVLRVPATFV LIASDINIPL
NITPKNGVFK LIQNGNTWSL IPMTQGEFDN LSLTAASHIR LEFQDIDGDG VNDLIVRDVS
GNRDSFIVSN LTGTANVDAY SLARNGIDLS QGSALSFKDI NGDGIKDIIK DENTSSATTY
LGSRSGRLID TSGTDAFTNP GNVIGLTAGQ FKVTESGAAT YSIPLNLPPA TAGVMPQVGL
SYNSQGGEGI LGMGWNISGL SAIARCPKSI AIDGKIEGIK YNTSDALCFN GQRLMLNANS
TNEYHTEIDN FSVITAFNGT NGPEYFTVTT QSNETHYYGK APNNISTSED AYVERGGYAA
KSAAKLWALK AIVDNKGNYI RYDYIKNVTK GSHILNSIAY GGNETLATAP YNRIEFIYTD
VARSLEGYSD GGILTNNKRL KQVIVKQDSD VFRSYNFTWL LTSIPEERNY VTGIQECFNE
SNTDCLPATK FEFEQPARKI PTSTYKMCRI NAPAEQAICT SVNYCDATSN GSGGWCEVNY
NTPDIAPFES ASYGAAASNA DRYYAQVLDF NGDGYADMLF PKDGKWHYYT TDWQVTTTES
LINIPERFKK NYLSSDPTTR SIKTSTISNS TQVISGASIG EKGYARVIDY NGDGKQELLI
PIASGYWHIL SSDSSTSEQT TCEPQPYPAP PICDTHTITN KFTYTSLGIL AKDYENAVVA
DVDGDGLQDI VFNSGSSLSY YHNLGGSFSA AKSISLDMPA SFSGATAYEA YGNDIVRTSA
NIKNSAMIDV NGDGLTDIVI KMRKITTNPP PPGCYDPRML AVAAVEDDEA AERCRETITV
DYGTYAFIAS VNAGQVSYTA TDNSYLGATL KAMRVADFNG DGLTDIAYIA SDRWYYRLSK
GNGIFTSPKA LNGIDAKTES IYNRHQFVDL DADGRSDILA ATTSKNYTIF LSGPSETTES
ANFIKRGTLP VGTSTTPEET ALRLADVDGD AKLDLLTASS STGTWKVQKA TRPYIKEHVL
TKITNAFGVQ TKIAYAPLNS GVPLINLESS QKPNDKDYIT PIAGMYVVTE AATQSTSTES
VLVQYAYGGP LAHKKGRGFL GFETVKTTDP QSGVVTTTQY HQLHPLTGMP KTTTRKYQDN
LLSSATNTYA QGTSANGGRH VYLKSSTEAS YSIDLSTDGI TATDHKKVAE TITTNTHDSW
NNLTQSIVDV KDAAGSLVHK TQTDNTYSSS AYGIISTDAI ALERSHSQQD VQAGTQPDAK
QFGRLYTTQV KKTRYKDTAS GTAESQTRNT KFSYYPNGML RESFVDGLNT AFFYDKYGNK
VAEQSYAKHN AVSYQKRGQY WFYDSRGQYL ARQMNQNGES ETYLLNGKSA STATLGLIYS
KTTTGPNKLA STSYFDIQGQ VVRQLLADGN YSETSKTLCE SCVENYITET NSSSNKPQTV
NYFDKFGRQR QQRVKGFDGA WIVTASSYDK LGRVTHSSVP NYDTASAVKS QQYYDALGRV
YKQTKLTETG TVTVYSKIDG LETTSIDEKG LQYKDIHSAD GQLITRIDPQ DQTISYYYDA
FGNARKVTTK AKDKNNAWKT QSITTNFDAY GRKMATNDPD KGSWSYGYNG FGELISQTDA
KSQTTTTEYD AMGRMLWRRD NSDLSCWSYG SDATKGNVGK PTGVKQWAAQ TSCTTTSAVQ
SSETYHYDAF GRPAQVDYTI DGASYSTRSE YNTKGQLSRQ HYPSNNGVFY VNFYYNANHY
LYLQKDSADR ELRRITAMDA LGNITAQSFA NGTSEARRFN QRTGRIDSID LKKGNSYIHQ
LSYGLFDAKG NVEYRSHSYY NGSGIQTLGF SENFTYDSLN RIETRDLSIG TGSLTGYGYD
EQYSYDGFGN INSRKGYAGG SYSVNLASYN YLQSTSVNRL DSANVDGKSY SKFIYDANGN
ITSDGSRSFS YNAFDKASRI QLGSQYSAYR YDSSRAVLSR SDYRQEAGEW KTFNTDYIGQ
LYQQERRYKG SAAIGSNLEN TRHKYMLGNI MVVRNQNATL GNSEQVQYQH GDHQGSTLSI
TDERGNILEQ YFYSAFGKPM KLAGSSLVQA ITPMERGYTG HEMLPNLDVI QMGGRIYDPN
LARFLQADPN IQAPTNLQNY NRYSYVLNNP LTYTDPSGYF FDKIFDFVKK YWKVIVAVVV
VVVTYGAATS WVASWGTTGA FGSAATAATS ATLTTAGAVA TGAIAGAAGG FVGGALATGS
LKGAFRGALT GAISGAAGGY ANAGAVSGWG DAAKRIAVAA AGGCGAGKAS GGSCSQGAKL
AAVSQAITMG AGELYRKVSS QYNKTGEPHL LQEGISDVGK QARVIHEPHF WGQSDQAGLM
KSIAKGPYMD AFAEFHDGLH EYLHDSLGSY AFLSDNSASL ILTMPPSYVL TVAAAARPYS
HLYSLDLMRE GKR
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