Gene Sden_0187 details

Gene Information

• Locus tag: Sden_0187
• Symbol: rpsE
• ID: 4017907
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 204331
• End bp: 204834
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637954163
• Product: 30S ribosomal protein S5
• Protein accession: YP_561207
• Protein GI: 91791556
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00000000820766
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAT TAGAAGCTCA GCAAAAAGAC GATCTGCAAG AGAAATTGAT TGCAGTTAAT 
CGTGTTTCTA AAGTAGTTAA AGGCGGTCGT ATCTTTAGCT TCACTGCACT AACAGTAGTG 
GGTGACGGTA ACGGTAAGAT CGGCTATGGC TATGGTAAAG CGCGTGAAGT TCCAGCTGCT 
ATTCAAAAAG CAATGGAAAA AGCCCGTCGT AATATGGTAA CAGTGGAGTT GAATGCAGGT 
ACTTTGCATC ACCCAGTTAA AGGTCGCCAT ACTGGTTCTA AAGTTTATAT GCAACCAGCA 
TCACAGGGTA CCGGTATTAT TGCCGGTGGC GCAATGCGTG CCGTATTGGA AGTAGCAGGC 
GTTCATAACG TTCTGTCAAA AGCATACGGT TCTACTAACC CGATCAACAT CGTTCGCGCT 
ACTGTCGATG CGTTGGTGCA CATGAAGTCA CCAGCTCAAA TCGCAGCCAA GCGTGGCCTG 
AATGTTGATG AAATTCGGGG GTAA 

 

Protein sequence

MAKLEAQQKD DLQEKLIAVN RVSKVVKGGR IFSFTALTVV GDGNGKIGYG YGKAREVPAA 
IQKAMEKARR NMVTVELNAG TLHHPVKGRH TGSKVYMQPA SQGTGIIAGG AMRAVLEVAG 
VHNVLSKAYG STNPINIVRA TVDALVHMKS PAQIAAKRGL NVDEIRG