Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0182 |
Symbol | rplE |
ID | 4017864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 202141 |
End bp | 202680 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637954158 |
Product | 50S ribosomal protein L5 |
Protein accession | YP_561202 |
Protein GI | 91791551 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0094] Ribosomal protein L5 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000000628056 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAAAC TGCATGATAA ATATCAAGAG ACTGTCGTCG CTGAACTAGC AAAAAAGTTC GGCTATAGCA GTGTCATGCA AGTCCCTCGG ATTGAAAAAA TCACCCTGAA CATGGGTGTG GGCGAAGCAG TAGCAGACAA GAAAGTTATG GAGCACGCGC TCCGTGATAT GACTGCAATT GCTGGCCAAA AGCCAATTGT AACTGTTGCT CGCAAATCAG TTGCTGGTTT TAAAATCCGT GAAGGCTACC CTATTGGCTG TAAAGTGACC CTGCGCGGTG AGCGTATGTG GGAATTTTTA GAGCGTCTAG TTGACATAGC AATCCCACGT ATTCGTGACT TCCGTGGCTT AAGCGCTAAA GCGTTTGACG GCCGTGGTAA CTACGCAATG GGCGTGCGTG AGCAGATCAT CTTCCCAGAA ATCGATTACG ATAAAATCGA TAAAATTCGC GGTATGGATA TTGTTATCAC TACCTCTGCG AAGACTGATG AAGAAGGTCA TGCCTTGTTG ACCGCTTTTA ACTTCCCATT CAAGAAATAA
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Protein sequence | MAKLHDKYQE TVVAELAKKF GYSSVMQVPR IEKITLNMGV GEAVADKKVM EHALRDMTAI AGQKPIVTVA RKSVAGFKIR EGYPIGCKVT LRGERMWEFL ERLVDIAIPR IRDFRGLSAK AFDGRGNYAM GVREQIIFPE IDYDKIDKIR GMDIVITTSA KTDEEGHALL TAFNFPFKK
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