| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0171 |
|---|
| Symbol | rplD |
|---|
| ID | 4017853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 197304 |
|---|
| End bp | 197909 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637954147 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_561191 |
|---|
| Protein GI | 91791540 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000000251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGG TATTGAAAGA CGCGCAGAGC GCTCTTGAAG TTTCCGAAAC TACCTTCGGC
CGTGACTTTA ACGAGGCACT GGTTCATCAG GTAGTTGTAG CTTACGCTGC AAACGCGCGT
CAGGGCACTC GTGCTCAAAA GACTCGTGCG GAAGTAACTG GCTCTGGCAA AAAGCCATGG
CGCCAGAAAG GCACAGGCCG CGCTCGTGCC GGTAGTGTTA AAGGCCCAAT CTGGCGTGGC
GGTGGCGTAA CATTCGCTGC TAAAACACAA GATCACAGCC AAAAAGTTAA CAAGAAGATG
TACCGCGGTG CTCTTAAGAG CATTCTGTCT GAATTGGTAC GTCAAGAGCG TTTAGTTGTT
GTTGAATCGT TCGGTGTTGA AGCTCCTAAA ACTAAAGAGC TGAAAGCTAA ACTGAAAGCA
ATGAACTTAG AAGACGTTCT AATTGTTACT GCTGAAGTTG ATGAGAACTT ATTCTTAGCA
GCTCGCAACT TATACAAGGT TGACGTTCGT GACGTAGCGG GTCTAGACCC AGTAAGTCTA
ATTGCGTTCA ACACTGTTCT TGTTACTGCT GATGCAGTGA AGCAAATCGA GGAGATGCTA
GCATGA
|
|---|
| Protein sequence | MELVLKDAQS ALEVSETTFG RDFNEALVHQ VVVAYAANAR QGTRAQKTRA EVTGSGKKPW
RQKGTGRARA GSVKGPIWRG GGVTFAAKTQ DHSQKVNKKM YRGALKSILS ELVRQERLVV
VESFGVEAPK TKELKAKLKA MNLEDVLIVT AEVDENLFLA ARNLYKVDVR DVAGLDPVSL
IAFNTVLVTA DAVKQIEEML A
|
|---|
| |