| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0163 |
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| Symbol | rpoB |
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| ID | 4017827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 183091 |
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| End bp | 187122 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954139 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_561183 |
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| Protein GI | 91791532 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0257445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCACAG
GTGTTGGATA TCCCTTATCT ATTGTCTATC CAACTAGACT CTTTTAAGAA ATTCACCGAT
CAAGACCCTA CCGGTGAGCG TGGTTTTGAA GCCGCTTTCC GTAGCGTTTT TCCTATCAAG
AGCTTTTCTG GTTACTCTGA GCTGCAATAT GTCAGCTACA AGCTAGGTGA GCCAGTATTT
GATGTGAAAG AGTGTCAGAT CCGTGGTGTT ACGTATTCGG CTCCATTACG CGTTAAATTG
CGTATGGTGT TATTCGATCG TGAAGCCGCA GCCGGCACAG TAAAAGATAT TAAAGAACAA
GAAGTCTACA TGGGTGATAT CCCATTGATG ACTGATAACG GTACCTTCGT TATCAACGGT
ACTGAGCGTG TTATCGTGTC TCAGTTACAC CGTTCTCCAG GCGTGTTCTT CGACCATGAC
CGTGGTAAAA CCCACTCTTC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT
GGTTCATGGC TCGATTTTGA ATTCGATCCT AAAGACGCCT TGTTCGTTCG TATCGACCGT
CGCCGTAAGT TACCAGCGAC TATCATGCTA CGTGCACTAG AATATTCGAC TCAGGACATC
TTAGACTTAT TCTTCGAACG CATTCAGTTC AAGATCAAGA AAGATTCTTT AGTGATGGCA
CTTGTGCCAG ATCGCCTCCG TGGCGAGACT GCAAGCTATG ACATTAAGGC TGCTGATGGC
AGTGTATTAG TTGAAGCTGG CCGTCGTATT ACTGCCCGTC ACATTAAGCA GCTTGAACAA
TCCAACACTA CTGAGCTTGA AGTGCCAGTA GATTACATCG TTGGCAAGTA TGCTGCTCAA
GACTATATCG ATGAAGATAC AGGTGAAGTA TTAGTTTCTG CTAACAACGA AATTAGCTTA
GAAGATTTAG CTAAGTTATC GATTGCTGGC ATTAAAGAAA TTGACACCCT GTTCATCAAC
GATCTTGATC ACGGTGCTTA TATTTCTGAC ACACTACGCA TAGATTCAAC AACTAACCGC
TTAGAAGCCT TAGTTGAAAT CTACCGTATG ATGCGTCCTG GTGAGCCGCC AACCAAAGAT
GCAGCTGAAG CATTATTCCA GAACTTGTTC TTCAGTGAAG AACGTTATGA CTTATCTAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTT GAGATTGCTG AAGACGAAGG TAACGGCGTA
TTGTCAAAAG ATGACATCGT TTGCGTTATG AAGAAAATCA TCGAAATCCG TAATGGTTAT
GATGAAGTCG ACGACATTGA CCACTTAGGT AACCGTCGTA TTCGTAGCGT AGGTGAAATG
GCTGAAAACC AATTCCGTGT TGGTCTAGTC CGTGTTGAGC GTGCCGTTCG TGAACGTCTA
TCTTTAGGCG ATCTAAACGA GCTAATGCCA CAAGACTTAA TCAACGCTAA GCCTATTTCT
GCGGCAGTGA AAGAATTCTT TGGTTCTTCG CAGCTGTCTC AGTTTATGGA TCAGAACAAC
CCATTATCAG AAGTGACGCA TAAGCGTCGT ATTTCTGCGC TTGGTCCTGG TGGTTTGACA
CGTGAACGTG CTGGCTTCGA AGTCCGCGAC GTACATCCAA CTCACTACGG TCGTTTATGT
CCAATCGAAA CGCCTGAAGG TCCAAACATT GGTTTGATCA ACTCGCTTGC GAGTTTCGCC
CGCACTAACT CTTACGGTTT CTTAGAAACA CCTTACCGTA AAGTGGTTGA AGGCGTGATC
ACCGATGAAG TTGAGTACTT ATCAGCCATC GAAGAAGGCC GCTATGTGAT TGCCCAGGCT
AACATCGAAG TTGATAGCAC TGGCCGCATG GTTGAAGAAC AAATTGCTTG TCGTCACAAA
GGTGAATCTA CCTTTATGCG CGCAGCTGAC ATCCAGTACA TGGATGTATC GCCACAGCAG
ATTATTTCTG TGGCAGCGTC CTTGATTCCG TTCCTAGAAC ACGATGATGC TAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAAGCC GTTCCTACAC TGCGTGCTGA TAAGCCGTTA
GTAGGTACTG GTATTGAACG TACGCTTGCT GTCGACTCAG GTGTTGTGGT TGTGGCTAAG
CGTGGCGGTG TGGTTGACTA TGTTGACGCG AGTCGCATCG TAGTTAAGGT TAATGAAGAT
GAGCTACGCC CAGGCGAAGC GGGTATCGAC ATTTATAACC TGACTAAGTA CACCCGCTCT
AACCAAAACA CCTGTATCAA CCAGCGTCCA TGTTGTTTCG TTGGCGAGCC TGTGGTTCGT
GGTGACGTAT TGGCCGATGG TCCTTCTACC GATTTAGGTG AGTTGGCGTT AGGTCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGATTCGAT CTTAATCTCT
GAGCGCGTAG CCCAGGAAGA CAGATTCACG ACTATCCACA TTCAGGAGCT TTCATGTATT
GCTCGTGATA CTAAGTTGGG TAGCGAAGAA ATCACTGCCG ATATTCCAAA CGTAGGTGAA
TCTGCTCTGT CTAAGTTAGA CGAGTCAGGT ATCGTATACA TTGGTGCTGA AGTTAAGGGT
GGCGATATTC TAGTGGGCAA AGTGACGCCA AAAGGCGAAA CACAGTTGAC CCCAGAAGAG
AAACTTCTCC GAGCTATCTT TGGTGAGAAA GCTTCTGACG TTAAGGACAG CTCATTGCGC
GTTCCTAACT CAGTGAAAGG TACGATTATC GACGTTCAAG TCTTCACTCG TGATGGCGTT
GAGAAAGATA AGCGTGCCCT AGAAATCGAA GAAATGCACG TTGCTCAGGC CCGTAAGGAC
CTAGGTGAAG AGTTTAAGAT CCTTGAAGAA GGCGTATTAA GCCGTGCACG TAACTTGCTA
CTGTCTGCGG GTTACTCAGA AGCTAAACTT GCTGAATTAC CACGTAAAGA CGTGCTAATC
CAAGTGATTG ACGATGAAGC TAAGCAAACT GAGCTTGAGC AATTAGCCGA GCAACATGAA
GAACTTAAAG CTGACTTTGA TAAGAAATTT GAAATCAAGC GTCGCAAGAT CACTCAAGGT
GATGACTTGG CACCTGGCGT ACTTAAGATT GTTAAGGTTT ACCTTGCAGT TAAACGTACT
ATCCAGCCTG GTGACAAGAT GGCCGGTCGT CATGGTAACA AGGGTGTAAT CTCTAAGATT
TGTCCTGTTG AAGACATGCC ATACGATGAA GAAGGTAATC CAGTAGATAT CGTGCTTAAC
CCGTTGGGCG TACCATCGCG TATGAACATA GGTCAGGTAC TTGAAGTCCA CATGGGTGCT
GCCGCTAAAG GCATAGGTAA TAAGATCACT GCTATGCTCG AAGAGCAGCG TGAAATTGCC
GAGCTTCGTG GTTACATCAA GCAAGTGTAT GAGTTAGGTG ATGACGTGCT ACAGCGCGTT
GATATCGATT CATTCAGCGA TGATGAAGTT GTCCGTTTGG CGACTCACCT TAAGGGTGGT
ATTCCAATCG CAACACCAGC ATTCGATGGT GCTAAAGAGA AAGAGATCAA GCAAATGCTT
GCTCTTGCAG GCTTACCAGA GTCTGGCCAG TTGACCTTAT GTGACGGCCG TACCGGTAAC
GAATTTGAGC GTAAAGTAAC CGTTGGTTAC ATGTACATGC TCAAACTGAA CCACTTAGTT
GATGACAAGA TGCATGCTCG TTCTACGGGT TCATACAGCT TAGTGACTCA ACAACCATTG
GGCGGTAAAG CTCAATTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTGTG GGCACTTGAA
GCATACGGTG CTGCATATAC TCTGCAGGAA ATGCTAACGG TTAAGTCAGA TGACGTTAAT
GGTCGTACAC AGATGTATAA GAACATCGTA GACGGCAATC ATCAGATGCA ACCAGGCATG
CCTGAGTCTT TCAACGTATT GTTGAAGGAA ATTCGTTCAC TCGGTATCAA TATCGAGTTG
GATCAAGAGT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGFE AAFRSVFPIK
SFSGYSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLFDREAA AGTVKDIKEQ
EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIML RALEYSTQDI LDLFFERIQF KIKKDSLVMA
LVPDRLRGET ASYDIKAADG SVLVEAGRRI TARHIKQLEQ SNTTELEVPV DYIVGKYAAQ
DYIDEDTGEV LVSANNEISL EDLAKLSIAG IKEIDTLFIN DLDHGAYISD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL EIAEDEGNGV
LSKDDIVCVM KKIIEIRNGY DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVVEGVI
TDEVEYLSAI EEGRYVIAQA NIEVDSTGRM VEEQIACRHK GESTFMRAAD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRADKPL VGTGIERTLA VDSGVVVVAK
RGGVVDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCFVGEPVVR
GDVLADGPST DLGELALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRALEIE EMHVAQARKD
LGEEFKILEE GVLSRARNLL LSAGYSEAKL AELPRKDVLI QVIDDEAKQT ELEQLAEQHE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
CPVEDMPYDE EGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNKIT AMLEEQREIA
ELRGYIKQVY ELGDDVLQRV DIDSFSDDEV VRLATHLKGG IPIATPAFDG AKEKEIKQML
ALAGLPESGQ LTLCDGRTGN EFERKVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DQE
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