| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0161 |
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| Symbol | rplJ |
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| ID | 4017825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 181935 |
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| End bp | 182435 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954137 |
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| Product | 50S ribosomal protein L10 |
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| Protein accession | YP_561181 |
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| Protein GI | 91791530 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0244] Ribosomal protein L10 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000494732 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCATTAA GACTCGAAGA CAAAAAGGCA ATTGTTGCTG AAGTCAACGA AGCTGCCAAA
GGTGCGCTTT CTGCAGTTGT TGCCGATTCA CGTGGCGTAA CTGTAGGTGC TATGACTGTT
CTGCGTAAAG CTGCTCGCGC TAATGGTGTT TATGTACGTG TTGTACGTAA CACTCTAGCC
AAGCGTGCGG TTGAAGGTAC TGCTTTTGAG TGCCTAGCTG AAACATTCAC TGGCCCAACT
TTAATTGCTT TTTCTAACGA GCACCCAGGT GCTGCAGCGC GTCTTTTAAA AGACTTCGCT
AAAGGAAATG CAAAATTTGA AGTTAAAGGT GCAGCTTTTG AAGGGATGTT TATCCCTGCA
GTTGACATTG ATCGTTTAGC GAAACTACCA ACTTACGACG AAGCACTAGC TCAGTTGATG
ATGACTATGA AAGAAGCATC TGCTGGCAAG TTCGTACGTA CATTGGCCGC CCTTCGCGAT
CAAAAACAAG AAGCCGCTTA A
|
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| Protein sequence | MALRLEDKKA IVAEVNEAAK GALSAVVADS RGVTVGAMTV LRKAARANGV YVRVVRNTLA
KRAVEGTAFE CLAETFTGPT LIAFSNEHPG AAARLLKDFA KGNAKFEVKG AAFEGMFIPA
VDIDRLAKLP TYDEALAQLM MTMKEASAGK FVRTLAALRD QKQEAA
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