| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0154 |
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| Symbol | |
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| ID | 4017815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 176083 |
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| End bp | 177054 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954127 |
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| Product | biotin--protein ligase |
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| Protein accession | YP_561174 |
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| Protein GI | 91791523 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
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| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00266236 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATAC AGTGGCATAA CAAAAGACAA ATTTTAGCAT TATTATCTTC CGATCATTTT
GTTTCCGGCG AGCAATTAGC CCAAGAATTA GCTATATCAC GCTCGGCGAT TCAACAACAG
ATCGAAGCCA TGGGCGAGTT CGGTATAGAT ATTTATTCTG TGAAGGGCAA GGGCTACAAG
CTGGCAACGC CCATCTGTCT CTTAGATGAA ACTCAGTTAT TGCAGCAGTT ATCTAACCGC
TGTTTTTACT TTAACGACAT ACCTAGCACC AATGCCTTTA TGCTCACTCA CGGCCAAGAA
CTCAAAAGTG GGGATATTTG CTTGGCAGAA TATCAATCTG CTGGCCGTGG CCGCCGTGGC
CGTCAGTGGT TATCTCCTTA TGGTCACCAT ATTTATGCTT CATTGTACTG GCGCTTGGAG
CAGGGCATGC CTCAGGCCAT GGGCTTAAGC CTAGTGGTAG CGTGCTCGAT TGTGACTGTG
CTCAAACAAA TGGGGGTGAG CGGACTCGGG CTTAAATGGC CGAATGATAT TTACCTTAAT
GACAAGAAGC TGGCCGGTAT TCTCATTGAG CTTATTAATA GTGCAGAGCA GGCGTGCCAA
TTGGTGATAG GTTTTGGGAT TAATATGAGC ATGTCTGCCA GTCAAGGTGA GCTTATCGAC
CAACCTTGGA GCGACTTGTC TACCCTCGAG TCTATGCCCG ACAAAACCGA GTTGGTAATT
GCGGTGCATA AGCAGCTAAA ACAGGATCTT AAACGCTTTG AAGCCGCGGG CCTTAAGGAT
TTTATTGATG CCTGGCAGGC GGATGATATT TTTATGGGCC GGGAAGTGAG TTTACTGATG
GCACCTAATG AAGTGACTGG GATTTATAAA GGCATAGATG AGCAAGGCGC AGTGCTGCTG
CAAACAGCAC AAGGGCTTCA GGCGTTTGTC GGCGGCGAGA TAAGCTTGAG AGCGACTAAT
AAGATGGCTT AA
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| Protein sequence | MSIQWHNKRQ ILALLSSDHF VSGEQLAQEL AISRSAIQQQ IEAMGEFGID IYSVKGKGYK
LATPICLLDE TQLLQQLSNR CFYFNDIPST NAFMLTHGQE LKSGDICLAE YQSAGRGRRG
RQWLSPYGHH IYASLYWRLE QGMPQAMGLS LVVACSIVTV LKQMGVSGLG LKWPNDIYLN
DKKLAGILIE LINSAEQACQ LVIGFGINMS MSASQGELID QPWSDLSTLE SMPDKTELVI
AVHKQLKQDL KRFEAAGLKD FIDAWQADDI FMGREVSLLM APNEVTGIYK GIDEQGAVLL
QTAQGLQAFV GGEISLRATN KMA
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