| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0125 |
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| Symbol | |
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| ID | 4017209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 136732 |
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| End bp | 137319 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637954098 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_561145 |
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| Protein GI | 91791494 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGCACT CCCGCCAACG GGGCTTTACC TTGCTCGAGG TGTTACTCGT GGCCTTGCTT
ATGGGGCTTA CTGCGGCTGC GGTAACCATG ACCATGGGTG ACGCTGGCCC AGAGAAGGAA
CTCAAACGTG CGGCGCAGCA ATTTATTGCC GCCACTGAGG TGGTGTTAGA TGAAACTGTC
CTCAGCGGTC AGTTTGTCGG CATAGTGGTG GAAGAGAACA GCTACGAGTT TGTTTATTAT
AAAGAAGAAA AATGGCTACC CATAGAAGAT GACAGACTGC TGGCCTTGCG TCAGTTGCCT
GAGTTTGTCA CGCTAGATCT CACCATAGAT GGTTTGCCGT TAGTGCAAGA AGATGAGCTA
GAGGATGAAT CTTGGTTCGA TGAGCCCTTT ATAGAAGCCG AAACCGAGTT AACTAAGACA
CAGAGACAAC GCCCCGATCC GCAAATTTTA TTGTTCCCCA GTGGCGAAAT TACCGCCTTC
GAGTTAAGAG TCAGTGCTAA GAACGACAAG CTCGAAGTCG TAGATGTGTT TATCAGTGGC
GATGCCATGG GACGTTTACA TTTGGGGCGC GCCGATGAAA CGTACTAA
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| Protein sequence | MQHSRQRGFT LLEVLLVALL MGLTAAAVTM TMGDAGPEKE LKRAAQQFIA ATEVVLDETV
LSGQFVGIVV EENSYEFVYY KEEKWLPIED DRLLALRQLP EFVTLDLTID GLPLVQEDEL
EDESWFDEPF IEAETELTKT QRQRPDPQIL LFPSGEITAF ELRVSAKNDK LEVVDVFISG
DAMGRLHLGR ADETY
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