Gene Sden_0084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0084 
Symbol 
ID4017132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp93202 
End bp94734 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content50% 
IMG OID637954057 
Producthistidine ammonia-lyase 
Protein accessionYP_561104 
Protein GI91791453 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGTCAT TTGAATTAGT ACCAGGCACC TTGAGCCTAG CTCAGCTGCG CCAGATCAGC 
CGTAACAAAG TGAACTTGCA CTTAGCCGAC TCGGCTATCG CCGAAATCAA TCAAAGTGCC
GCCATAGTGC AGCAAGTGTT GAGTGAAGGC CGTACTGTTT ATGGTATCAA CACAGGTTTT
GGCCTATTGG CGAACACTAA AATTGCGCCT GAAGACTTAC AGTTACTGCA GCGCTCGATT
GTGTTGTCCC ACGCTGCAGG TTTTGGTCAA TACATGCAAG ATGCCTCAGT TCGCTTGATG
ATGGTGCTTA AGATCAACTC CTTAAGCCGA GGCTTCTCTG GTATTCGTTT GGAAGTGATT
AACTTTTTGA TTCAGTTGGT TAATGCCGGT GTTTATCCTT GTGTGCCTGA GAAAGGCTCA
GTAGGCGCAT CGGGCGATTT AGCGCCACTG GCTCATATGT GTTTGCCACT ATTGGGCGAA
GGCGAGATGA GCTACGAAGG GCAGATTATT TCTGCTAAAG AAGGCCTTGA AATCGCAGGC
CTTGAGCCGT TAGAGCTTGC TGCCAAAGAA GGCTTAGCCC TGCTAAATGG CACCCAAGCT
TCCACTGCAC TGGCGCTCGA AGGCTTATTT AATGCCGAAG ACTTGTTTGC GGCAAGTTCA
GTGATAGGGT CTATGAGTGT GGAAGCGGCC ATGGGCAGTC GTAGCCCGTT CGATGCCCGT
ATTCATGCGG CGCGTGGCCA GAAAGGTCAA ATCGATTCGG CTGCCGTGTT CCGTCATTTA
TTAGGTGAAA CATCGGAAAT CAGCCTAAGT CATGTTAACT GCACTAAAGT GCAAGATCCG
TATTCGCTGC GCTGTCAGCC ACAGGTATTG GGCGCATGTT TAACTCAAAT TCGCCATGCG
GCAGATGTCT TAGGGGTCGA AGCCAATGGC GTGACAGATA ACCCGTTAGT ATTCCAAGAC
ACGGGCGATA TTATTTCAGG CGGTAACTTC CACGCTGAAC CTGTGGCCAT GGCGGCGGAT
AACTTAGCCA TAGCCATTGC CGAACTTGGC TCCATTGCCG AGCGTCGCAT TGCCTTGCTT
ATCGATTCAA GCTTATCGCA CTTACCGCCA TTCTTAGTGA ATAACGGCGG GGTTAACTCG
GGCTTTATGA TAGCCCAGGT AACGGCAGCA GCACTGGCTT CTGAAAATAA AACCTATGCC
CATCCCGCCT CGGTAGACAG CTTACCGACA TCGGCCAATC AGGAAGATCA CGTCTCTATG
GCGACCTTTG CCGCCCGCAG ATTGCGTGAT ATGAGTGAAA ACACCCGCGG CGTATTGGCA
ATTGAATTGC TTGCTGCGGC GCAGGGGTTA GATTTTAGAG CGCCTCTAGC ACCCAGTGAG
GCGGTGGCGA GTGCTAAAGC CGAGCTGCGT GAATTGGTCA CCTTTTACGA TAAGGACAGA
TTTTTTGCGC CTGACATCGA AAGCGCTGCT GAGCTTTTGT ATAGCGCCAG CTTCAACGCT
TATTTGCCTG CTGGATTAAT GCCAAGCTTC TAA
 
Protein sequence
MMSFELVPGT LSLAQLRQIS RNKVNLHLAD SAIAEINQSA AIVQQVLSEG RTVYGINTGF 
GLLANTKIAP EDLQLLQRSI VLSHAAGFGQ YMQDASVRLM MVLKINSLSR GFSGIRLEVI
NFLIQLVNAG VYPCVPEKGS VGASGDLAPL AHMCLPLLGE GEMSYEGQII SAKEGLEIAG
LEPLELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGSMSVEAA MGSRSPFDAR
IHAARGQKGQ IDSAAVFRHL LGETSEISLS HVNCTKVQDP YSLRCQPQVL GACLTQIRHA
ADVLGVEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIAIAELG SIAERRIALL
IDSSLSHLPP FLVNNGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM
ATFAARRLRD MSENTRGVLA IELLAAAQGL DFRAPLAPSE AVASAKAELR ELVTFYDKDR
FFAPDIESAA ELLYSASFNA YLPAGLMPSF