| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0076 |
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| Symbol | |
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| ID | 4017124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 83458 |
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| End bp | 86283 |
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| Gene Length | 2826 bp |
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| Protein Length | 941 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637954049 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561096 |
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| Protein GI | 91791445 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAAATG TCAAATTGGC AATCGCCTTG AGTATTCTGC TGGCCTTATT GGCTACGCTC
ACCCTGACGG TGACGCAAGG CATCGCGGCC AAAACCACTC AAACTGTGGC AGCTACTAGC
ACGGAACTCG GTGTGCAATT AAATGCTGTG ACACTCACCG ACATGCCGGC AACCCATTAT
CTCCCTCTCA CTAAAGAAGA ACGTCTCTGG CTGGACAATA ACCAGCCCAT TAGGGTCGGC
GTCGATGGTA ATTTTCCTCC TTATAGTTTC CTCGATGAAA ATAATCAGCC CGTGGGCATT
GCTATCGATA CCTTAGAACT TATCGGCAAG AAACTCGACA TTGAGTTTGT CATAGATAAA
CAATCAAGTT GGCGAAAGGT CATCTCTAAT TTAGATGCGA AAAAAATCGA TGTGATACTG
ACCATGGTGC GAACCCCTGA GCGGGAAGTG AACTACCTAT TTACCTCCCC AATAGTCTAT
AAGTCACTGG TTATTATTAA TAATAAAGAC AGTTCCGCCA TAGAAAACCG GGGAGACATT
GCCAGTAAAA CCATAGCGTT AGTTAAAAAT TATCACTATG TCAGTAAAAT TCTCAATGAG
TTCCCAAGTG TGGTGCCTTT TTATGTTGAT ACTATGCGTG AAGCCCTAGA AGCGGTAGAA
GCCAAAAAAG CCGATGCCGC CATTACTTTC TTCGCTGGGG CTAATTTCTT ACAACAGAAA
TACTTATTCA GTAATTTGGA ATTTGCCGCT TTCTATGAAA GAAACAGCGC CAATGATGCC
ATTGCCATTA GGCAAGACCA GCCCATGTTG GCGGCCATAA TGCAGAAAGG TTTAGACGTT
TTAAGTGCAG ATGATAAATT GAAAATTAAT GAGAAATGGC ATGCTAACAT CACGCTGCCA
ACTAACCATC AAGTTGTGAT TGAAATTGCC TTAGTGGCAG GGCTGTTAAT CAGCTTATTA
CTGCTCTGGC TAGTGCGAGA AAAACGTCAC AACAGAGTGC TAGTGTCAGC ACAAGTTGAT
ACAGAGGATG CCAACAGGGC CCTTAATAGC TTGCGGGAAA AACTAGAAAT AATCGTCAGT
GAGCGCACGG TACAACTTAA AAATAGTGAA AACAGGTACC GAGGCTTAGT GGAGTCATTA
CAAGATGAAT ACATCTTCTA TCAACACGAT ATTCAAGGCG AGATACAATA TGTAAGCCCT
TCAATTACTC ACATACTTGG GCATAAGGCG CTCAATTTCA GGGGCAGCTA TAACAAGTAC
CTAACCAGTA ATAAGAATAA CCTTGCCATT CCAGAACTGA TACTGCGCTG CATTAAGGGA
GAGCATGTCC CACCTTTTGA GATAGAAATC ATGGATATTA AGGGCGCTTA CCATACCTTT
GAAGTGTTAG AGCGCCCCAT GTACAACGAA CAAAACGAGT GTATAGGTTG TGAAGGCATA
GCCCATGACA TTACTGAAAG AAAACAGCAT CAACGCAAAC TCTATCGCTT GTCCCATTTT
GATAAGCTGA CCAATCTCGC CAATCGCTAC CTATTTACCT TGTCATTGGG GCAAGCCATC
ACCTCGGCGA AAGCCTTAAA CCAAACGTTC GCCTTACTGT TTCTCGACCT GACTCGCTTC
AAAATCATCA ATGATAACCT AGGCCACAGC GCTGGGGATA AACTATTACA ACAAGCCGCA
CTTAGGCTCA CTGAGCAATT AAATAGTCAA GATATCCTAG CCCGCTTCGG GGGGGATAAA
TTTTGTATTT TGCTGCCTGA GAGCGATGAA AAACAAGCCG AAGCTGTGGC ATTAACACTG
ATCAAAATCT TAGCTCAACC ATTTGAGGTG TATGAGCAGT CGTTTATTTT GGGTTGCCGC
ATCGGAATTA GCCTCTTTCC AACCAATGGC CACGACCCAG AGACCCTATT GAAACAAGCC
GATGCAGCGC TTTATGTGGC CAAGAAGCGC CCCGCTGGTT TTGCCTTCTG CAGTGAAGAG
CAAGCAGTCT ACAATCAGCG CCGCCTTAAG TTAGAGCAAG GTTTAAGGCT GGCGTTAAGT
AAGTCAAGCT TCGATGAGAG CTTTGAGCTG TCAGCCGTCT ACCAGTCTTT AAATCAACTA
CCTGATGCTG GACTTGCGGG TTTTGAAGCC TTAATTCGCT GGGTTCACCC TGAATTGGGG
CCAATATCGC CGATGGAATT TATTCCTATC GCCGAAGAAA CGGGACTTAT TTTCGAATTA
AGCCGTTGGA TGCTGACTAA GGTTTGCCGT CAGCTTAAAG AATGGCACCA GCTAGGTTTT
GACTTTAAAC GTGTTTCGGT AAATTTGTCA GCCCTAGATC TTATCAATAT CAATCTTGCA
GAAGAAATCA TCAATCTAAT AGAAGAAGCA GGTGCCGAAC CCCGCTGGCT TAAAATAGAA
ATAACAGAAA CTGCCTTAAT GGCAGCCCCT GAACAATCCA TCAGTACACT GCAGCAGTTA
GTAGGAAACG GCATTCACGT GGCTATCGAT GATTTTGGCA CTGGCTATTC ATCGTTGGCC
TATTTGAAGT CCCTGCCTGC GACGTCGTTA AAAATCGATC AGTCTTTTAT TCGCAATATT
ATGACCTCCA TCGAAGATCA AGCAGTAGTC AAGGCTGTCA TCAGCATGGC TCATTCTCTA
GGGAAAAAAG TCACCGCCGA AGGGGTTGAA ACCCAAGAAC AGCTGGATTT TCTCATCACG
CGTCACTGTG ACTTAGCCCA GGGTTACCTG TTCGCTAAAC CCTTAATCGC CCAGGACTGT
GTTAAAAAAT ACGCGGCCAA CAATAATCAA AATAAAATTG TGACCTTCAA GCGCTCGCTA
AAATAG
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| Protein sequence | MKNVKLAIAL SILLALLATL TLTVTQGIAA KTTQTVAATS TELGVQLNAV TLTDMPATHY
LPLTKEERLW LDNNQPIRVG VDGNFPPYSF LDENNQPVGI AIDTLELIGK KLDIEFVIDK
QSSWRKVISN LDAKKIDVIL TMVRTPEREV NYLFTSPIVY KSLVIINNKD SSAIENRGDI
ASKTIALVKN YHYVSKILNE FPSVVPFYVD TMREALEAVE AKKADAAITF FAGANFLQQK
YLFSNLEFAA FYERNSANDA IAIRQDQPML AAIMQKGLDV LSADDKLKIN EKWHANITLP
TNHQVVIEIA LVAGLLISLL LLWLVREKRH NRVLVSAQVD TEDANRALNS LREKLEIIVS
ERTVQLKNSE NRYRGLVESL QDEYIFYQHD IQGEIQYVSP SITHILGHKA LNFRGSYNKY
LTSNKNNLAI PELILRCIKG EHVPPFEIEI MDIKGAYHTF EVLERPMYNE QNECIGCEGI
AHDITERKQH QRKLYRLSHF DKLTNLANRY LFTLSLGQAI TSAKALNQTF ALLFLDLTRF
KIINDNLGHS AGDKLLQQAA LRLTEQLNSQ DILARFGGDK FCILLPESDE KQAEAVALTL
IKILAQPFEV YEQSFILGCR IGISLFPTNG HDPETLLKQA DAALYVAKKR PAGFAFCSEE
QAVYNQRRLK LEQGLRLALS KSSFDESFEL SAVYQSLNQL PDAGLAGFEA LIRWVHPELG
PISPMEFIPI AEETGLIFEL SRWMLTKVCR QLKEWHQLGF DFKRVSVNLS ALDLININLA
EEIINLIEEA GAEPRWLKIE ITETALMAAP EQSISTLQQL VGNGIHVAID DFGTGYSSLA
YLKSLPATSL KIDQSFIRNI MTSIEDQAVV KAVISMAHSL GKKVTAEGVE TQEQLDFLIT
RHCDLAQGYL FAKPLIAQDC VKKYAANNNQ NKIVTFKRSL K
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