| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0045 |
|---|
| Symbol | |
|---|
| ID | 4017244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 58803 |
|---|
| End bp | 59450 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637954018 |
|---|
| Product | flagellar basal body rod protein-like protein |
|---|
| Protein accession | YP_561065 |
|---|
| Protein GI | 91791414 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG4786] Flagellar basal body rod protein |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAG CTGTAATTAC TGAAGGGATA AATACACAAT TACAAAGCCT AGCAACGACG
AGTAATAATG TGGCGAATGC TAATACCCCT GGGTACTTGA GACAAACAAG TTTTACTCAA
GTATTGGATG CTCAAATTCA AACGCAAACA CAAGTCAGCA GTAAACAATT GTCAGGGGCC
ATTAAGCAAA CGGGCAATGT ATATGATTTT GCCGTGCTAG GGAAAAGTTT GTTTGTGGTT
GAGTTGCTGG GAGAGCTTAG GTTAACCCAA GATGGCCGTT TTCATTTAAA TGAGGCTGGT
GACTTGGTTC ATATCTCAGG TGCTATGGCA ATGACATCAG AGGGGCCTTT AGCTGCAAAT
ACAGAAACAG ATCAGATTGC AGCACGCCTT TGGACAGTTT CTACTTCAGA GTCGTATACA
AATTTACAGC CTGCAGAAAT GGGACTTTAT CTTGCCAATT GGGATGACTG GAAGACAAAT
GATGATAGTA AGGTTTTGGC ACAGGCATTA AATTATACCG AACATAATGC AACTGCTGAT
GTGCTCGAGA TGATGCGAAT ACAGCGTTCT GTAGAATCCC TGCAGAAAGC TTATCAGACT
TATGACGCTG CGATAGGTTA TGGGATTTCA GAATTAGGGA GAAGATGA
|
|---|
| Protein sequence | MIEAVITEGI NTQLQSLATT SNNVANANTP GYLRQTSFTQ VLDAQIQTQT QVSSKQLSGA
IKQTGNVYDF AVLGKSLFVV ELLGELRLTQ DGRFHLNEAG DLVHISGAMA MTSEGPLAAN
TETDQIAARL WTVSTSESYT NLQPAEMGLY LANWDDWKTN DDSKVLAQAL NYTEHNATAD
VLEMMRIQRS VESLQKAYQT YDAAIGYGIS ELGRR
|
|---|
| |