Gene Sden_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0034 
SymbolaroE 
ID4017900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp40277 
End bp41098 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content49% 
IMG OID637954004 
Productshikimate 5-dehydrogenase 
Protein accessionYP_561054 
Protein GI91791403 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000384966 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGATA AGTATGCCGT CTTTGGCAAC CCCATAGCCC AAAGTAAATC GCCCATGATC 
CACACTGAGT TTGCCAAACA GACTCAGCAA AACATGAGCT ATTCGGCAGT GCTGGCTCCT
GTGGAAGGGT TTGCAGCCAG TATTAAGTCA TTTTTTGCCT CTGGTGGTCG TGGGGCCAAC
GTCACAGCAC CATTTAAAGA GCAAGCTTTT AGCTTGTGTG ATGAGCTCAG TGAATTAGCG
CAACTCGCGG GGGCGGTGAA CACCTTAGTG CGTTTAGAAG ATGGTAGGCT CAGGGGGGAC
AATACCGATG GTCTAGGTTT AGTCGCCGAT ATTGAGCGGC GATTGACTTC GCTCAAGGAT
AAACGGGTCC TGCTAGTGGG AGCGGGCGGC GCTGCAAGAG GGTGTATATT ACCTCTGCTA
CAGGCGGGTG TTGCTCAGCT CGATATCACT AACCGCACTC ATGACAAAGC TCTGCAGTTA
GCTCAGTTAT TTAGTCGCTA TGGCAATATC AAGGCGCTAA CGCTTACAGA GCTTGCTTCT
GGCTATGACG TCATTATTAA TTCAAGCTCA GCAGGCTTAA CAGGCCAACT TATTAGCTTG
CCGAGCACGA TTATTGATGG CACTACTTAT TGCTATGATA TGAGCTATGG CAGTGATACG
ACCCTGTTTA ATCAATGGGC CCTGTCAGCG GGTGCTTGCC ATTGCTGTGA TGGTTTGGGG
ATGTTAGTCG GTCAGGCGGC GCAAAGTTTT TATTTATGGC GAAATGTCCA TCCAGATGCC
ACTACTGTGA TGCAACAGCT GCGTGATGCA CTGGGTCGTT AA
 
Protein sequence
MTDKYAVFGN PIAQSKSPMI HTEFAKQTQQ NMSYSAVLAP VEGFAASIKS FFASGGRGAN 
VTAPFKEQAF SLCDELSELA QLAGAVNTLV RLEDGRLRGD NTDGLGLVAD IERRLTSLKD
KRVLLVGAGG AARGCILPLL QAGVAQLDIT NRTHDKALQL AQLFSRYGNI KALTLTELAS
GYDVIINSSS AGLTGQLISL PSTIIDGTTY CYDMSYGSDT TLFNQWALSA GACHCCDGLG
MLVGQAAQSF YLWRNVHPDA TTVMQQLRDA LGR