Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0028 |
Symbol | |
ID | 4017894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 34705 |
End bp | 35268 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637953998 |
Product | DNA topoisomerase I |
Protein accession | YP_561048 |
Protein GI | 91791397 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0369311 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAAAA TCGATCAACA GCTGTTTAAT GCCCATGAAC ATGCGTTGGA AAAAGAGTAT GAACAGTGCC CTAAGTGCGG CTGCGAGTTA TCGATTAGGC ACAGTAAACA TGGTGGTTTT GTCGGCTGCA ATAATTACCC AAGCTGTGAT TATACAAGGC CCTTAGTACA ACATGAGGCC ATAGATACCC AATTGATTGC GGGCTCACAA TGTCCGAAAT GTGGCCATGA ATTGGCGGTT AAATCTGGCA GATTCGGTAT TTTTATCGGT TGTAGCCATT ATCCTGAATG CAATCACATA GAAAAAACCG ATCATAGTGT GGCTAAGGCG CCTATCGAGT GTCCTTCATG CCATAAAGGC CAACTTGAGT CGCGCACTAG CCGCTTCGGT AAAACTTTTT TCGCCTGCAA TCATTACCCT AAGTGTAAAT TCATTGTCAA TTACCCGCCT CACGATGAAG CCTGCCCCGA TTGTGGTTTT GGCATCTTGG TCGAACGAAA AGGCGCAGCG GGTTTACGCT TAGAATGTCC ACAAAAGGCC TGCAAGTACA AACGGCCGAT ATAA
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Protein sequence | MSKIDQQLFN AHEHALEKEY EQCPKCGCEL SIRHSKHGGF VGCNNYPSCD YTRPLVQHEA IDTQLIAGSQ CPKCGHELAV KSGRFGIFIG CSHYPECNHI EKTDHSVAKA PIECPSCHKG QLESRTSRFG KTFFACNHYP KCKFIVNYPP HDEACPDCGF GILVERKGAA GLRLECPQKA CKYKRPI
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