| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0004 |
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| Symbol | |
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| ID | 4017796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3715 |
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| End bp | 6132 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637953974 |
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| Product | DNA gyrase, B subunit |
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| Protein accession | YP_561024 |
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| Protein GI | 91791373 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.236407 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAGA ATAGTTACGA TTCTTCGAGT ATCAAGGTAT TAAAAGGCCT TGATGCAGTA
CGCAAGAGAC CTGGTATGTA CATTGGTGAT ACTGATGATG GTACGGGTCT TCACCACATG
GTGTTCGAAG TAGTCGATAA CTCTATCGAT GAAGCCTTGG CCGGCCACTG TAGTGATATC
ACCATCACCA TACATACAGA TGGCTCAGTG TCAGTGCAAG ATGATGGCCG TGGTATTCCT
GTCGCTATCC ATGAGGAAGA AGGGGTCTCA GCTGCCGAAG TTATTATGAC GGTATTGCAT
GCCGGCGGTA AGTTCGATGA TAACTCTTAT AAAGTGTCCG GTGGTTTGCA CGGTGTGGGT
GTGTCGGTTG TTAACGCACT ATCACACAAG CTGCAGCTGA CTATTCGTCG TGGCGGCAAG
ATTTATGAGC AATTTTATAC CATGGGCGTG CCCGATGCGC CTATCGCTGC GATTGGTGAT
GCAATTAAAA CCGGTACTGA AATTCGTTTC TGGCCCAGTG GTGAAACCTT CACTAATCTA
GAGTTCCATT TCGATATCTT GGCTAAGCGT GTTCGCGAAC TGTCTTTCCT TAACTCAGGT
GTAGGTATTC GCCTGATTGA TGAGCGCGAC AACAAAAACG AATTCTTTAA ATACGAAGGC
GGCATCAGCG CATTCGTGAC TTATTTGAAC CGCAACAAGA CACCAGTTAA CAAAGACGTA
TTCCATTTTG CTCATGAGCG TGAAGATGGC ATTACCGTCG AAGTGGCGAT GCAGTGGAAT
GACGGTTATC AAGAAAATAT TTATTGCTTC ACTAATAACA TTCCCCAGCG CGATGGTGGT
ACTCACTTAG CCGGTTTTAG AGGTGCGTTA ACTCGTAACC TAAATACTTA TATGGAGCGT
GAAGGCTTCA ATAAGAAAGG TAAAACCAGT GCCACAGGTG ATGATGCCCG TGAAGGGTTA
ACTGCGGTTA TATCGGTTAA AGTCCCAGAT CCTAAGTTCA GCTCACAAAC TAAAGACAAG
CTAGTCTCTA GCGAAGTGAA AAGTGCGGTT GAACAAACCA TGGGTGAGCA GCTTAATGAT
TACCTATTGG AAAACCCTGC CGATGCTAAG CTGATTGTTG GCAAGATTGT CGATGCAGCT
CGTGCCCGTG AAGCGGCCCG TAAAGCCCGT GAAATGACCC GCCGTAAAGG CGCGTTAGAT
TTAGGTGGTT TGCCAGGAAA GCTTGCGGAT TGCCAAGAAA AAGACCCAGG TCTTTCAGAA
ATCTACATAG TGGAAGGGGA CTCTGCTGGC GGTAGCGCCA AGCAGGGACG TAACCGTAAA
AACCAAGCAA TTTTGCCACT AAAAGGTAAA ATTCTAAACG TAGAAAAAGC TCGTTTTGAT
AAGATGTTAT CTTCTCAAGA AGTGGCAACC CTTATCACAG CATTAGGTTG TGGTATCGGC
CGTGATGAAT ACGACCCAGA AAAGACCCGT TATCATAACA TCATCATCAT GACGGATGCT
GACGTCGACG GCTCGCACAT TCGTACCTTG CTGTTGACCT TTTTCTTCCG TCAAATGCCT
GAGCTTATCG AGCGTGGTTA TATTTATATC GCTCAGCCAC CGTTATTCAA GGTGAAAAAG
GGTAAGCAAG AGCAGTACCT TAAAGATGAG CCAGCCTTAA CTGAATACTT AACCACTCAG
GCGTTAGATG GTACTCGAAT CTACCCAACT CAGGGTGCGC CAGGTATGAC AGGTGAGCCA
TTAGAGCGTT TAGTGGCCCA GTATCGTGAA GTTGAAACTA TCATAGCTCG CTTAGAGAAA
CGCTATCCAA GCATAGTGCT TAACCGCATG CTGTATCACC CAGAGGTTAC CGGCGCTATG
TTGGCGGATG AGACTCAGAT GAAAGCTTGG TGCGCAGAGT TTGTGGCGGA TCTAATAGAG
CTTGAAACCA ATGGCGTGAT CTACGACATG GTGACCGAGT TTGATATGGA GCGTAAAGTT
TACCTGCCTA AGATGGTTAT TCGTAAGCAC GGTATTGATA CCGAATACTT GTTTGGCTAT
GACTTCTTCC ACTCTCTGGA TTATCAGCGC ATCGCTAAGT TAGGTGCAGC TCTGGATGGT
ATGGTTGAAG AAGGCGGTTA TGTTCAGCGC GGTGAGAAGG TTAAAGAAGT TGAGACCTTC
CTCGAAGCGT TAGATTGGAT GATAAGCGAA GCTAAGCGCG GCCTTTACAT TCAGCGATAC
AAAGGTTTGG GTGAAATGAA CCCTGAGCAA TTGTGGGAAA CCACAATGGA CCCTGAGACT
CGCCGTATGC TACGGGTTAC CATTGAAGAT GCTGTGGGTG CAGATCAACT GTTCACCACA
TTGATGGGCG ATCAGGTAGA GCCGCGACGT GAGTTTATCG AGGCTAACGC CTTGAACGTG
GCTAACCTAG ATGTATAA
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| Protein sequence | MSENSYDSSS IKVLKGLDAV RKRPGMYIGD TDDGTGLHHM VFEVVDNSID EALAGHCSDI
TITIHTDGSV SVQDDGRGIP VAIHEEEGVS AAEVIMTVLH AGGKFDDNSY KVSGGLHGVG
VSVVNALSHK LQLTIRRGGK IYEQFYTMGV PDAPIAAIGD AIKTGTEIRF WPSGETFTNL
EFHFDILAKR VRELSFLNSG VGIRLIDERD NKNEFFKYEG GISAFVTYLN RNKTPVNKDV
FHFAHEREDG ITVEVAMQWN DGYQENIYCF TNNIPQRDGG THLAGFRGAL TRNLNTYMER
EGFNKKGKTS ATGDDAREGL TAVISVKVPD PKFSSQTKDK LVSSEVKSAV EQTMGEQLND
YLLENPADAK LIVGKIVDAA RAREAARKAR EMTRRKGALD LGGLPGKLAD CQEKDPGLSE
IYIVEGDSAG GSAKQGRNRK NQAILPLKGK ILNVEKARFD KMLSSQEVAT LITALGCGIG
RDEYDPEKTR YHNIIIMTDA DVDGSHIRTL LLTFFFRQMP ELIERGYIYI AQPPLFKVKK
GKQEQYLKDE PALTEYLTTQ ALDGTRIYPT QGAPGMTGEP LERLVAQYRE VETIIARLEK
RYPSIVLNRM LYHPEVTGAM LADETQMKAW CAEFVADLIE LETNGVIYDM VTEFDMERKV
YLPKMVIRKH GIDTEYLFGY DFFHSLDYQR IAKLGAALDG MVEEGGYVQR GEKVKEVETF
LEALDWMISE AKRGLYIQRY KGLGEMNPEQ LWETTMDPET RRMLRVTIED AVGADQLFTT
LMGDQVEPRR EFIEANALNV ANLDV
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