Gene Sden_0003 details

Gene Information

• Locus tag: Sden_0003
• Symbol: recF
• ID: 4017795
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2617
• End bp: 3699
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637953973
• Product: recombination protein F
• Protein accession: YP_561023
• Protein GI: 91791372
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1195] Recombinational DNA repair ATPase (RecF pathway)
• TIGRFAM ID: [TIGR00611] recF protein

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0384357
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTAC AGCGGATTAG CATAGAATCG TTTCGTAATA TTGCCGCGGC TAACCTGTTG 
CCAAGTGAAG GCTTGAACTT AATTTATGGC CACAATGGCA GTGGTAAAAC TAGCGTGCTT 
GAAGCGATTT ATTTCCTCGG TATGGGTCGC TCTTTTCGCA GCCATTTGTC CCAGCGCGTT 
ATCCGCCATG ATGAGGACAA ACTCACCCTA TTTGCACAAC TCAGTCATCA TAATGGTGAG 
AGCAAGGTCG GCTTACGTCG CCACCGAAAT GGCGAAATTG AAGTCAAAAT TGATGGTGAC 
AGGGTTAAGC GGTTATCCAC ATTGGCCGAA ACTTTACCCA TACAAGTGAT CACCCCTGAG 
AGTTTTTCGC TGCTATTTGA AGGCCCTAAG GCTAGGCGTC AGTTTGTCGA CTGGGGCGCA 
TTTCACTCGG ATGAGCAATT CTACACGGCT TGGTCCAATG TAAAGCGAAT ATTAAAGCAG 
AGAAATCAAC TGCTTAGAAA TGGTTCTTCC TATGGGAATA TTCTATTTTG GGATAAGGAG 
TTGGTGCGTT ATGCTGAACA GGTTACCCAG ATACGAAATC ACTATGTAGA CTCGTTAAAT 
GAGCTACTTA AGGGTATAAT CGAAGAGTTT TTACCTCAAG TGAATATCAG CATTTCATTT 
ACACGAGGAT GGGACAGTAA AACGGATTTA GCCCTATTAC TCGAAAGCCA ATATTCTAGA 
GATTTAGCCA CAGGCCATAC AGTGAGTGGA CCGCACAAAG CAGATTTAAG ACTGCGTGTC 
GGAAACTTAC CCGTGCAGGA TGCCTTGTCC CGTGGACAGT TAAAATTGTT AGTCTGTGCG 
CTGCGTATTG CACAGGGAAA GTTGCTTAAA CAACAAAAAG ATAAGCAGAG CATTTACCTA 
GTGGATGATT TGCCATCCGA ATTGGATGCA CAGCATAGGC AGCTATTGCT CAAGCAGTTA 
ACCGAGACTG GTGCACAAAT ATTTGTCACC GCCATCGAAC CTGCGGCAAT AGTCGATTCG 
TTAGCTAGCC CTCCTAATAA AGTGTTTCAT GTGGAACAAG GGCGAGTGAC GGTAATTGAA 
TAA 

 

Protein sequence

MSLQRISIES FRNIAAANLL PSEGLNLIYG HNGSGKTSVL EAIYFLGMGR SFRSHLSQRV 
IRHDEDKLTL FAQLSHHNGE SKVGLRRHRN GEIEVKIDGD RVKRLSTLAE TLPIQVITPE 
SFSLLFEGPK ARRQFVDWGA FHSDEQFYTA WSNVKRILKQ RNQLLRNGSS YGNILFWDKE 
LVRYAEQVTQ IRNHYVDSLN ELLKGIIEEF LPQVNISISF TRGWDSKTDL ALLLESQYSR 
DLATGHTVSG PHKADLRLRV GNLPVQDALS RGQLKLLVCA LRIAQGKLLK QQKDKQSIYL 
VDDLPSELDA QHRQLLLKQL TETGAQIFVT AIEPAAIVDS LASPPNKVFH VEQGRVTVIE