| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_C0458 |
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| Symbol | |
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| ID | 4009972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007953 |
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| Strand | + |
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| Start bp | 477771 |
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| End bp | 479552 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637953092 |
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| Product | putative type IV secretory pathway protein VirD4 |
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| Protein accession | YP_555712 |
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| Protein GI | 91780505 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.626492 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGG CGACGCATTC AGGCGGATAC GGTGGACCTC CTCTGGTCGT GGGCGTCTGG
CGTGGCCGCT ATCTGCGGTT CACCGGCCAG CAGTTCGTGC TGCTCGCGGC ACCGGCGCGC
TCGGGCAAGG GCGTGGGCAT CGTGGTGCCC AATCTGCTCA GCTACCCGGA TTCGGTGGTT
GTGCTCGACA TCAAGCAGGA GAACTTCAAC CTGACCGCAG GATTCCGTCG TGCGCACGGG
CATGACGTGT ACCTGTTCAA CCCGTTTGCC GAGGACGGCC GTACGCACCG GTATAACCCG
CTGTCGGCGA TTTCGGATGG CGTATTCCGC GTTGGCGACA TCCTGGCGAT CGGCTACGCG
CTGTATCCGG TTGGCGGTCA CGACGACTTC TGGAAGGACC AGGCACGCAA TCTCTTTCTC
GGGATCGTGC TGCTGCTGTG CGAGTGGCGC GATGCGTGCC GCACCGGCAA CACCGATGTG
CCCGACTACC CGGTGACGAT GGGCGAGGTA CTGCGGCAGT CATCGGGCAA CGGCATGCCC
GTCAAGGCAT ACCTGCAGCA GGCGCTGCTG CAGAACCGGC GACTGCTCAG TGGCGCGTGC
GTCGATGCGC TCAACCGCTT TCTCGCGAAC GACGACAAGG TGCTCGCGAG CATTCTCGCA
ACCTTCAATG CGCCGCTCAC GATCTGGGCC AATCCGATTG TCGACGCCGC GACGAGTGCC
AATGACTTCG ACCTGCGCGA TGTGCGCAAA CGGCGCATGT CGGTCTATGT CGGGATCACG
CCGGACCACC TGAGCGAGGC AGCGCTGCTC GTCAACCTTG TGTTCTCACA ACTCGTCAAC
CTTAATACGC GACAACTGCC CCAGGACAGT CCGGAGCTGA AGGTCCAGTG TCTGCTGCTG
ATGGACGAAT TCACGTCGGT TGGCAAGATT CACATCATTG CCCGCGCAGT CGCCTATATG
GCGGGATACA ACCTGCGGCT GCTCTCGATC GTGCAGTCGG TGTCGCAGCT CGAGTCGGTC
TATGGCCGGG CGGACGCCAG GACGTTCGTC ACCAATCACG CGATGCAGAT CATCTATGCG
CCGCGTGAGC AGAAGGACGC GAACGAATAC TCGGAGATGC TCGGTACCTT CACGGACCGC
TCGCGCAGCG TGAGCCGGTC GAACGCGGTA TTTGGCGGGC GCGGCGGGTC GAGCGAGAGT
TTCTCTGAGC AGCGCCGTCC GCTGCTGCTG CCGCAGGAGC TGAAGGAACT CGGACGTGAG
AAGGAAATTA TCCTGCTCGA AAATACGAAG CCGATCCTGG CGGAGCGGAT CTGCTACTGG
CGCGACCCTG TTTTCACGTC ACGTCTGGTG GCTGCGCCAG CGATTCCAGC GATGGATCTC
GTGCGCTTCA TCGCCCAGGT TGAGCGGCGG GTGAGGGATG TGCAACCGGA CGACGTGGAC
GAAGCCGGCG TGATGCACAT TCCCCCGGAG TATCTGGAAG TGCTGCAGGC CTGGGATCCA
CGCGACCTGC CACGGCATCT CAACGACGTG ACCGACGAAG AGGCGGCCGC CTACGTCGAG
CGACATTTCA TGCTGCTGGG CGTGCCCGCT GCGCGCGTGG CCGTGGCAGC GCGCCGCCTG
TCGCCGTCCG ATCTTGATGT GGCGGAACTG CGCCCCGCGG ATCGAGCGCC GAAACGCAAG
TCCGCGCGCA GCACAGGTGC CTCGCGGAAA CAACACGGGC CCGCGACATC GCGCCCAACT
GACGGCTCGA ACGTGGTGCC GCTTCACGGA GAACGCCGAT GA
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| Protein sequence | MSAATHSGGY GGPPLVVGVW RGRYLRFTGQ QFVLLAAPAR SGKGVGIVVP NLLSYPDSVV
VLDIKQENFN LTAGFRRAHG HDVYLFNPFA EDGRTHRYNP LSAISDGVFR VGDILAIGYA
LYPVGGHDDF WKDQARNLFL GIVLLLCEWR DACRTGNTDV PDYPVTMGEV LRQSSGNGMP
VKAYLQQALL QNRRLLSGAC VDALNRFLAN DDKVLASILA TFNAPLTIWA NPIVDAATSA
NDFDLRDVRK RRMSVYVGIT PDHLSEAALL VNLVFSQLVN LNTRQLPQDS PELKVQCLLL
MDEFTSVGKI HIIARAVAYM AGYNLRLLSI VQSVSQLESV YGRADARTFV TNHAMQIIYA
PREQKDANEY SEMLGTFTDR SRSVSRSNAV FGGRGGSSES FSEQRRPLLL PQELKELGRE
KEIILLENTK PILAERICYW RDPVFTSRLV AAPAIPAMDL VRFIAQVERR VRDVQPDDVD
EAGVMHIPPE YLEVLQAWDP RDLPRHLNDV TDEEAAAYVE RHFMLLGVPA ARVAVAARRL
SPSDLDVAEL RPADRAPKRK SARSTGASRK QHGPATSRPT DGSNVVPLHG ERR
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