| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_C0328 |
|---|
| Symbol | |
|---|
| ID | 4009842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007953 |
|---|
| Strand | - |
|---|
| Start bp | 358125 |
|---|
| End bp | 359267 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637952973 |
|---|
| Product | OmpC family outer membrane porin |
|---|
| Protein accession | YP_555593 |
|---|
| Protein GI | 91780386 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000000489556 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.173694 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG CGATGTTGGC TCTAGGAGTA GCAAGCGCGA TGTCGAGCGC TGCGCATGCG
CAGGCTAGTG TGACCTTGTA TGGCCTGATC GATACCGGTA TCGATTATGT TAATAACAGC
GGAGGCGGAA AATTGTTCCA AATGCAGGAC GGTGGGTACA CGGGACTTGC GGGCAGCCGC
TGGGGATTAT TAGGAACCGA GGACCTTGGG GGCGGCTATA AGGCTATCTT CAGACTGGAG
AACGGATTCA ATGAGATCAA CGGCAAACTC GGGGCGGGAG GCGGAGAGTT TGGCCGTCAG
GCCTACGTTG GTTTTGCAAG TGACCGTTTT GGGACTTTGA CTATGGGTCG CCAGTATGAT
GCAGTCGTCG ACGATTTCGG ACCATTGACT TTCACGCACT ACTACGGCGG CATTTTTTAT
CATGCTGGCG ACATCGACAA CGGCGGCAAT TCGTTTCGGG TAAACAACTC GGTCAAGTAT
ACCAGTCCGA ATCTCCATGG CTTTTCGTTT ACAGGCCTGT ATGCTTTTAC GAACTCGAAC
GAGCCTAGCG TTGGGACGAC AGGGATGTGG AGCGTAGGGG CGAATTACAC AAACAGTACC
CTGTACCTTG GCGCGGCGTA TTTCTTTGCG AAGAATCCCG CGGTGCTTTT ACCGGGAGGC
GACTTTCTAC CGAATACTAC GGAAAGTGCA ATCGGTGCCA CTGGATCGTT CAGCTACGTA
GGCAACCCAT CGAACGCGCA GGTCTTCGGT TTTGGCGTGA ATTACTTAAT TAGTTCTACT
ACTATTGGGC TTAACTTCAG CCAGGCGAAG TTTGACAATG CCAATGGAAC TACTAGTTCC
GTAATCTTCA ATAACTACGA GGCGTGGGTA AGTGTCGCGA TCACGCCAGC GTTTAGCGCA
GGAGCGAGAT ACACGTTCTC AGATGGAAAA GTAAATTATT CGGGCCAGTC GCCCAGATAT
CATCAGGTTG GTGTGGGCGC AAAATATTCG CTCTCCAAGA CGACGACCAT CTATGCCGCC
GCCGATTTCG AAAAGGCGGC AGGAGATGCG AAGGTGGCCG ATATTGCCGA AGGGATAGTG
GGAACAGCGT CTACGACTGA CAAACAGCTT GTCACGCGCA TCGGCATCAT GCATAGGTTC
TAA
|
|---|
| Protein sequence | MKKAMLALGV ASAMSSAAHA QASVTLYGLI DTGIDYVNNS GGGKLFQMQD GGYTGLAGSR
WGLLGTEDLG GGYKAIFRLE NGFNEINGKL GAGGGEFGRQ AYVGFASDRF GTLTMGRQYD
AVVDDFGPLT FTHYYGGIFY HAGDIDNGGN SFRVNNSVKY TSPNLHGFSF TGLYAFTNSN
EPSVGTTGMW SVGANYTNST LYLGAAYFFA KNPAVLLPGG DFLPNTTESA IGATGSFSYV
GNPSNAQVFG FGVNYLISST TIGLNFSQAK FDNANGTTSS VIFNNYEAWV SVAITPAFSA
GARYTFSDGK VNYSGQSPRY HQVGVGAKYS LSKTTTIYAA ADFEKAAGDA KVADIAEGIV
GTASTTDKQL VTRIGIMHRF
|
|---|
| |