| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B2902 |
|---|
| Symbol | prpD |
|---|
| ID | 4006733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | - |
|---|
| Start bp | 148394 |
|---|
| End bp | 149845 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637949807 |
|---|
| Product | 2-methylcitrate dehydratase |
|---|
| Protein accession | YP_552443 |
|---|
| Protein GI | 91777235 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
|---|
| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTC CGATTTCCAA CGTGCGACCC GACCCGGACC AGGTCCTGGT CGATATCGTC
GATTACGTAC TGGACTATCC GGTCGACAGC ACGCTCGCGC TGGAAACCGC GCGTCACTGC
CTGATCGATA CACTCGGCTG CGGACTCGAG GCGCTCACCT ACCCGGCCTG CACCAAGCTG
ATGGGACCGA TCGTGCCCGG CACGATCGTC CCCAACGGCG CGAAGGTGCC CGGTACGTCG
TTCCAGCTGG ACCCGGTTCA GGCCGCCTTC AACATCGGCG CCATGATCCG CTGGCTCGAC
TTCAACGACA CATGGCTGGC CGCCGAATGG GGCCACCCGT CGGACAATCT CGGCGGCATT
CTCGCGACGG CCGACTGGCT CTCGCGCAGC GCCATCGCAG CCGGCAAACC GCCGCTGGCG
ATGAAAGACG TGTTGATCGC CATGATCAAG GCGCACGAAA TTCAAGGCTG TATCGCGCTC
GAAAACTCCT TCAACAAGGT CGGGCTCGAT CATGTGCTGC TGGTGAAACT GGCGTCGACC
GCGGTGGTCG GCCAGTTGCT CGGTCTCACG CGCGACGAGC TGATCAATGC GGTCTCGCAG
GCGTTTGTCG ATGGGCATGC GCTGCGCACC TACCGCCACG CACCGAATAC CGGCTCGCGC
AAGTCGTGGG CCGCGGGCGA CGCAACCTCG CGCGCGGTGC GCCTCGCGCT GATCGCGAAG
ACCGGCGAGA TGGGCTATCC GTCGGTGCTG ACCGCGAAAA CATGGGGCTT TTACGACGTG
CTCTTCAAGG GCAACGCATT CAGGTTCCAG CGCCCGTACG GTTCGTACGT GATGGAGAAC
GTGCTGTTCA AGATTTCGTT CCCGGCGGAA TTCCACGCGC AAACGGCGGC GGAAGCCGCG
ATGAACCTGC ACGCGCAACT CAACGCAGCC GGCAAGCGTG TGGAGGACAT TCGCAAGATC
ACGATCCGCA CGCACGAGGC CGCGATTCGC ATCATCGATA AAAAAGGCCC GCTGAACAAT
CCGGCCGACC GCGATCATTG CATTCAGTAC ATGATTGCCG TGCCGCTGAT CCACGGCCGC
CTGACGGCCG CGGACTATGA AGATTCGACC GCACAGGACG CGCGCATCGA CGTGCTGCGC
GCAAAGATGG AATGTGTCGA AGACCCGCAG TTCACGAAGG ATTACCACGA TCCCGAGAAG
CGTTCGATCG CCAATGCACT GACGATCGAA TTCAACGACG GTTCGACATT CGACGAAGTC
GTAGTCGAAT ACCCGATCGG TCACAAACGT CGTCGCGAAG ACGGAATTCC GTTGCTGGTC
GAGAAGTTCA GGACCAACCT CGCGCGCCGC TTTCCGGTCA AGCAACAGCT GGCGATTCTC
GACGTGTCGC TGGATCAGGC GAGGCTCGAA GCCATGCCGG TCAATGAATA CGTCGATCTG
TACGTCATCT AG
|
|---|
| Protein sequence | MSAPISNVRP DPDQVLVDIV DYVLDYPVDS TLALETARHC LIDTLGCGLE ALTYPACTKL
MGPIVPGTIV PNGAKVPGTS FQLDPVQAAF NIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRS AIAAGKPPLA MKDVLIAMIK AHEIQGCIAL ENSFNKVGLD HVLLVKLAST
AVVGQLLGLT RDELINAVSQ AFVDGHALRT YRHAPNTGSR KSWAAGDATS RAVRLALIAK
TGEMGYPSVL TAKTWGFYDV LFKGNAFRFQ RPYGSYVMEN VLFKISFPAE FHAQTAAEAA
MNLHAQLNAA GKRVEDIRKI TIRTHEAAIR IIDKKGPLNN PADRDHCIQY MIAVPLIHGR
LTAADYEDST AQDARIDVLR AKMECVEDPQ FTKDYHDPEK RSIANALTIE FNDGSTFDEV
VVEYPIGHKR RREDGIPLLV EKFRTNLARR FPVKQQLAIL DVSLDQARLE AMPVNEYVDL
YVI
|
|---|
| |