| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1925 |
|---|
| Symbol | |
|---|
| ID | 4007577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | - |
|---|
| Start bp | 1238140 |
|---|
| End bp | 1240326 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637950768 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_553398 |
|---|
| Protein GI | 91778190 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0535292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.500981 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGT CTACAGAACA GGAAACCGAG CAAAACCGTC TCGCGGCGCT TGCGGAATAC
GGCATCGGAT CGGTGCTCTC AGACCCGGGT TTTGATCGTC TGGTCCAGCT TGCCGCCAGC
ATTTTCAGTG TTCCCATTGC ACTGATATCG CTGGTCGAAA CCGAAAGACA GCTTTTTGCC
GCGAGCGTGG GACTGGACGT TTGTGAAACG TCGCGCGATG TATCGTTCTG CGCGCATGCG
ATCAGAGGCG ATGACATCAT GATCATTCCC GATGCCCGCG TCGATGCGCG TTTCCACGAC
AATCCGCTGG TGACTGGCGC ACCCTTTATC CGCTTCTACG CGGGCGCACC GCTGCGCACC
GCCAGCGGCC ACGCGCTCGG TACGCTGTGC ATTATCGGGC ACCGGCCCCG CGAGAATTTC
GGTGAACAGG ACCGGCGCAA CCTGCGCGAC CTTGCGGCGC TCGTGCTGGA CAAACTCGAG
ATCCGCAGAC TGGAAATGGC GCGACGCACG AGCCAGTTCC GGTTCGAGAA GATCGCGGGC
ACCTCGCCCG ACGCCATCAT CTGCGCGGAT GAGCAGGGCC TTACGACGTT CTGGAATCCG
GCGGCCGAGA AGCTGCTGGG ATACCGGTCC GATGAAATAC TCGGCCGCAG CATCGACCTC
ATCGCACCCG AGCAGTTCAC CGCGCGCCTC TACCAGCTCG CCGCGGCCGG CGAATCGCTG
ACCGAGGGGC GCACCGTGGA GATGATGGTC CGGGCCGCCA ACGGAACAAT GATTCCGGTC
GAGCTGTCCG GGTCGATGTG GCGCGAAGAC GGCCGTCCCA GGTTCGGCGC GATCCTGCGC
GACATTACGG AGCGGCGTCA GAACGAGGAG CGGCTCCTCC GCCTGGCCCA CATCGATCCG
CTGACCGAAC TGCCTAACCG GACCATGCTC AGGGAGCAGG TCGAGCTGGC CCTCAGTAAA
GAGATGACGG CATCTGTGAT GATGGTAGAC CTCGACGGCT TCAAGGACGT CAACGACAGT
CTCGGCCATT CAGGCGGAGA TGCGGTTCTG GTCAATGTAG CCCGCCGCCT GCAGGCCTGC
GCGCGATCTG GCGACACGGT CGCCCGGATG GGTGGCGATG AATTTGCGAT CCTGCTGCCA
GGACTGCCTG ATGCAGTCGA GGCCGGACAG ATTGCGGACA GCGTGATCGC GGCAGTGTCA
CAGCTGCTGA CCATTGACGG GCAGCCCGTG AATATTGGCG CCAGCATCGG CATTGCGATG
TTCCCCGGAG ACGGACTGAC GGTGCGGGAA CTGCTTTCGA GCGCCGACCT CGCGCTCTAC
CAGGCCAAGG CCGAGGGCCG ACATTGCCGC CGCTTTTTCA GCGCGGACCT GCGCGAGGAG
GCAACGCTCA GGCGCGCGTA TCAGGGTGAA CTGGCCAGGG CACTCGCACA TCAGGAGTTC
GAGCTGCATT ACCAGCCACA GGTGAGGCTG GCCGACAGTA CGCTCGTGGG CGCGGAAGCG
CTGCTGCGAT GGCGCCATCC GCAAAAGGGA CTGCTCGGCC CGGGCGCCTT CCTTCCGGCG
ATCGAAGCAG GCCTGCTCGC GCCACGGATC GGCGACTGGA TCATCAGCAT GGCCTGCGAG
CAGGCGGCAC AATGGCGCAG CCTGGTGCCG GACTTCCGTG TGGGCGTCAA CCTGTTCGGC
GCGCAGTTCC GCACGGGCGA CCTGGCGGAC AAGGTTCTTG CTGCACTGCA GGCGTTCAAC
CTGCCCCCTG CCGCGCTTGA ACTTGAAATT ACCGAGAACA TCATCCTGCG TCATGACGAG
CATATGCTCG GACCGCTTCG GGAACTGCAT CAGCGCGGCG TGGGCATCGC CTTCGACGAC
TACGGTACCG GCTATGCGTC GCTCAGCATG CTCAAGCGCT ATCCGTTGTC ACGGCTGAAG
ATCGACCAGA CATTCGTGCG CGCCATGCTG GAGTCTCCTC CGGACGCGGC CATCATCAGG
GCGATCCTTT ACCTTGGTCA TAGCTTCGGT CTTGAGGTCA TTGCCGAAGG CGTGGAAACC
GGGGAGCAGG CCGCACGGCT GCGCAAGAAA GGGTGTGAAA CCGCGCAGGG ATTTCTGTTC
GGCAAGCCGA TGCCCGCGGA GGAGTTTGCG CGGCAGTTCA TTGGGCCGCC CGCTGATCAC
GGCAGGGGCA CGCCAACCAT ACTGTGA
|
|---|
| Protein sequence | MASSTEQETE QNRLAALAEY GIGSVLSDPG FDRLVQLAAS IFSVPIALIS LVETERQLFA
ASVGLDVCET SRDVSFCAHA IRGDDIMIIP DARVDARFHD NPLVTGAPFI RFYAGAPLRT
ASGHALGTLC IIGHRPRENF GEQDRRNLRD LAALVLDKLE IRRLEMARRT SQFRFEKIAG
TSPDAIICAD EQGLTTFWNP AAEKLLGYRS DEILGRSIDL IAPEQFTARL YQLAAAGESL
TEGRTVEMMV RAANGTMIPV ELSGSMWRED GRPRFGAILR DITERRQNEE RLLRLAHIDP
LTELPNRTML REQVELALSK EMTASVMMVD LDGFKDVNDS LGHSGGDAVL VNVARRLQAC
ARSGDTVARM GGDEFAILLP GLPDAVEAGQ IADSVIAAVS QLLTIDGQPV NIGASIGIAM
FPGDGLTVRE LLSSADLALY QAKAEGRHCR RFFSADLREE ATLRRAYQGE LARALAHQEF
ELHYQPQVRL ADSTLVGAEA LLRWRHPQKG LLGPGAFLPA IEAGLLAPRI GDWIISMACE
QAAQWRSLVP DFRVGVNLFG AQFRTGDLAD KVLAALQAFN LPPAALELEI TENIILRHDE
HMLGPLRELH QRGVGIAFDD YGTGYASLSM LKRYPLSRLK IDQTFVRAML ESPPDAAIIR
AILYLGHSFG LEVIAEGVET GEQAARLRKK GCETAQGFLF GKPMPAEEFA RQFIGPPADH
GRGTPTIL
|
|---|
| |