| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1411 |
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| Symbol | |
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| ID | 4008100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | + |
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| Start bp | 1809512 |
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| End bp | 1811515 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637951283 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_553903 |
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| Protein GI | 91778695 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000118993 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.446718 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT TACTGGAAGA TAAGCCGTGG GCAGTCGTTC AGACGATCCG GTCGATCATC
GCCACCCCTG CCAGTGCGAA GTTAAGGCGG TCCCAATACA AAGCATTTTC GCGCCAGGTT
CCGCTTTTAT ATGTGCTTCT TGTCGTCAAT ACGGCAGCGG TGGTCTTCAC CCATTTCCGG
GTAGCGCCGC GCTGGCTCGC GGTTTATTTA CCGCTTGCCC TGTGCGCGGC CTGCGCCGGA
CGGATCGTGC TGTGGCTGCG GGCCCGCAAA GCTGAACCGC CCGACGAGGT GATCGCCCAG
CGCCTGCGCA ATACCTTGCG GCTTACGGCT TTATTCGGCG CCGCGTTCAC CGTCTGGGGT
CTTTTGCTGT TTCCGTACGG CGACGCCTAC GCTCAATGCC ATGTGGTGTT CTATATGTCG
ATCACGGTGA TCGGCTGCAT CTTCTGCCTG ATGCATATGC GCGCCGCCGC GCTACTGATG
ACATGCATCG TGGTCGCGCC TTTTGCGGTG TTTTTCCTGA TGAGCCAGCA TGCCGTGCTG
ATCGCCATCT CGATCAACAT GGTGCTCGTT TCCGCCGTGA TGATCGTCAT CCTGCTGATT
TACTACCGCG ATTTCGCGAA TCTTGTGGAA TCGCAGCGCA AGCTTCTGAT CAAGCAGGCG
GAGACCGAGC GTCTCAGCAT GGAGAACCTC CGGCTCGCCA ATCTCGACGG GCTGACGGGA
CTACCCAATC GCCGCCGTTT CTTCTCCGAC CTCGACAAAC TGCTTGTGAC CGCCAGCGCG
ACCCGCACGG GCATGGCCGT CGGTGTGCTC GACCTCGACG GGTTCAAACC GATAAACGAT
CTCTACGGCC ACCATTTCGG CGACCGGTTG CTCGAAGAAG TCGGGCGCCG TCTTGCATCG
CTTTCGTCGC CTGGCCTGAT TGCCGCCCGC GTAGGCGGCG ACGAATTTGG GCTCCTGTTT
GGCGGCGACG TCAGTCAGGC GAGGCTGCGC GAACTGGGCG CCGCAATCTG CGCTACGCTG
CAGCGGCCCT ATGAACTGAC GGACGTCACC GCGCGTTTGA CTGCATCGCT CGGCATCGCG
GTTTTCCCCG AGGCGGGCAC CACAGCGGTA GAGTTGTCTG AGCGGGCGGA CTATGCGCTG
TCTTTTGCGA AAAATCATCG CCGTGGCGCA ACGGCGATAT TTTCCCGTGA ACACGAAACG
CAGATCAGGC GGTGCAATGA AATCGAACAG GCCCTGAAAC TGGCGGACTT CGAGCGCGAG
ATCTCCGTAT TCTTCCAACC CATTTTCGAC ATCTCCTCCA AAGGAATAGT GGCTTTTGAA
GCACTCGCGC GATGGACAAG TCCTTCACTC GGCACGATAC CGCCCGTGGA CTTTCTCGCA
GCGGCAGAGA AAACCGACAT GATCCATTCA ATGACGCATG TTTTGCTGCG CAAAGCCCTG
GAGGCCGCGG CGACGTGGCC GCCGCAGATG CGCATAGCGT TTAATCTTTC GGCTCGCGAC
GTCAGTTCCC CCGAGGCAAT CGACGGCGTG ATCCGTACCG CGCTAGCTAG CGGCGTGGCC
CCTGAACGGA TCAATTTCGA AGTGACTGAA ACGGCGCTCA TCAAGAATGT TTCGAGTGCG
TGCGAAACAC TTGGCGCCCT GAAAAAACTC GGAGCGGAAA TTTCTCTCGA CGACTTCGGT
ACTGGATACT CCAGCCTGAG CTATGTTCAC CGGCTTCCTA TCGACAAGCT GAAGGTCGAC
CGCAGTTTCA TTGCGGATAT CGTGGACGAT GCGGCCGCCC GTGCCGTCGT CAAGAGCATC
GTGGACCTGT GCAGGAACCT CGGCCTCACC TGTGTTGTAG AGGGCGTCGA AACCGCATCG
CAGGTTAGCG TTCTGCGGGG ACTGGGCTGT ACCGTCATGC AAGGGTACTT CTTCGGCAAA
CCGGTGGCGG GTGCGGACGT ATTGCAGTCG TTCGTGATGA ACGGCTCTGT CACGGCTCGA
AGTGCGGCTG CATCAACGCT TTGA
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| Protein sequence | MKKLLEDKPW AVVQTIRSII ATPASAKLRR SQYKAFSRQV PLLYVLLVVN TAAVVFTHFR
VAPRWLAVYL PLALCAACAG RIVLWLRARK AEPPDEVIAQ RLRNTLRLTA LFGAAFTVWG
LLLFPYGDAY AQCHVVFYMS ITVIGCIFCL MHMRAAALLM TCIVVAPFAV FFLMSQHAVL
IAISINMVLV SAVMIVILLI YYRDFANLVE SQRKLLIKQA ETERLSMENL RLANLDGLTG
LPNRRRFFSD LDKLLVTASA TRTGMAVGVL DLDGFKPIND LYGHHFGDRL LEEVGRRLAS
LSSPGLIAAR VGGDEFGLLF GGDVSQARLR ELGAAICATL QRPYELTDVT ARLTASLGIA
VFPEAGTTAV ELSERADYAL SFAKNHRRGA TAIFSREHET QIRRCNEIEQ ALKLADFERE
ISVFFQPIFD ISSKGIVAFE ALARWTSPSL GTIPPVDFLA AAEKTDMIHS MTHVLLRKAL
EAAATWPPQM RIAFNLSARD VSSPEAIDGV IRTALASGVA PERINFEVTE TALIKNVSSA
CETLGALKKL GAEISLDDFG TGYSSLSYVH RLPIDKLKVD RSFIADIVDD AAARAVVKSI
VDLCRNLGLT CVVEGVETAS QVSVLRGLGC TVMQGYFFGK PVAGADVLQS FVMNGSVTAR
SAAASTL
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