| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1392 |
|---|
| Symbol | |
|---|
| ID | 4008119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | + |
|---|
| Start bp | 1833293 |
|---|
| End bp | 1834552 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637951302 |
|---|
| Product | RND efflux system membrane fusion protein |
|---|
| Protein accession | YP_553922 |
|---|
| Protein GI | 91778714 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.0449025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0986293 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATT CATCACTTCA GCCGGGGCTT GGTGAGCAGC CACCCAAGGC CGTGAAAACC
ACCCACACCG CTCACGCCAG CGCCGCTCAC CCCGCGCCCG AACCCGACCC ACACGCGAAA
CCGCGCCGCC GTCTGTGGCC GTTCGCACTG GGCGGCCTCG CCGTGGCGCT GCTGATCGTC
GGCATCGTGC CGCGCCTTCA TGCCAGCGCC GCGCTCACCG AGCAAACACA AGCGCAAAGC
ATGCTCGTCG TTTCGGTGGT CAAGCCGCGC CCCGCGCCGA GCATGAATGA ACTGCTGCTG
CCCGGCTCCG TGATGCCGTT CGCCGAAGCC TCGATCTACG CGCGCACGAG CGGCTATCTC
GCGCATTGGA ACACCGACAT CGGCGCGCAG GTGAAAAGCG GCCAGGTTCT CGCGACGATC
GAAGCGCCCG ATCTGGACGC GCAACTGCGC CAGGCCCGCG CCGACGAAGC CACCGCGCAG
GCCAATTTCG ACTACGCGAA GACCACCGCG CAGCGCTGGG AGGACATGCT GAAGACCCAG
TCGGTCGCGC AGCAGGACGC CGACACCAAG GTCAGCGACA TGGAAGCGCG CCGCGCCATG
CTGGCGTCGG CGCAGGCCAA TGTCGCGCAT CTCGCCGAAC TGGTCTCGTA CGAGAAAATC
ACCGCGCCGT TCGACGGTGT GATCACCGCG CGCAACGTGG ACGTCGGCGC ACTGGTGACG
GCGGGCGGCA CGCCCGGCGC CGCGGGCATG TCGGGCGAGC TATTCCATAT CCAGCAGAAC
GGCGTGCTGC GAGTGTTCGT CGACGTGCCG CAGAACGACG CGCCTTACGT CACGCCGGCC
ACCGGCGTCT ATCTGAGCGC CCAGCAGTAT CCGGGCCGCC GCATCCCCGC GAAGGTGGCG
CGCAGCACCG GCTCGATCGA TCCGTCGAGC CGCACGCTGC GCGTCGAGGT GGACGTCGAC
AACAAGGACA GCGCGCTGAT GCCCGGCGCT TACACGCAGG TGCATCTGCA ACTGCAATCG
GCCACGCCGG CACTCGATGT GCCCGTCAGC GCCCTGCTGT TCCGGCCGGA CGGCGTGATG
GTCGCGGTGG TCGACAGCAA TGGCCGCGCG GTGCTGAAGA CCGTGCATAT CGGCCGCGAT
TTCGGCACGC ACGTGGAGAT CACGACGGGA CTCGCCGCCA CCGACCGCGT GATCGACAAC
CCGAGCGATT CGCTGAGCAC CGGCCAGATG GTTCAGATCA TGCCGGCCAT GCACGGCTGA
|
|---|
| Protein sequence | MNDSSLQPGL GEQPPKAVKT THTAHASAAH PAPEPDPHAK PRRRLWPFAL GGLAVALLIV
GIVPRLHASA ALTEQTQAQS MLVVSVVKPR PAPSMNELLL PGSVMPFAEA SIYARTSGYL
AHWNTDIGAQ VKSGQVLATI EAPDLDAQLR QARADEATAQ ANFDYAKTTA QRWEDMLKTQ
SVAQQDADTK VSDMEARRAM LASAQANVAH LAELVSYEKI TAPFDGVITA RNVDVGALVT
AGGTPGAAGM SGELFHIQQN GVLRVFVDVP QNDAPYVTPA TGVYLSAQQY PGRRIPAKVA
RSTGSIDPSS RTLRVEVDVD NKDSALMPGA YTQVHLQLQS ATPALDVPVS ALLFRPDGVM
VAVVDSNGRA VLKTVHIGRD FGTHVEITTG LAATDRVIDN PSDSLSTGQM VQIMPAMHG
|
|---|
| |