| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1283 |
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| Symbol | |
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| ID | 4008228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | - |
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| Start bp | 1945900 |
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| End bp | 1950495 |
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| Gene Length | 4596 bp |
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| Protein Length | 1531 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637951406 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_554026 |
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| Protein GI | 91778818 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.950777 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGAGG CGTTCTGGGC CGCCCGCGAG GGCGACGCGC TGCTGCATAC GTCGCTGATG
GCCGATATCG CGGGCGGCGT GCTCGACGTG GCAATCAATG CGGCCATCAT GCTTGCGGTG
GATCTCGCCG TGGGAGCCGC CATTGCCGCT GCTCCATTCA CGTTCGGTGC CAGCGCATGT
CTCGCGGTGG GACTGGTCGT CGGTGTGGGC GTCGGTATCG GCATGTCGGC GTCGGGCCTG
AGCGAAGGCA TATCTTCGTT CTGTTCCGAT GTCGGTAACG CGATATTTCC CCCGACCGTT
CAGGGACATA TTTCGAGCGG ATCGGCTGAC ACGTACGTCA ACGGCAAACG TGCGGCGCGC
GCGGCCGGCA TTCTGCTGAC CCAGGAGGAG ATCGATGCGC AGGTGAAGGC CGCCGCGGAA
GCACCGCCCA GGCAGCAGTC GATCATCGAT ATCGCGGGCG AGGCATTGCA GTGGGGACAA
GCTTTCATTT CGCAGATGTG GCGCCCGGCA GTGGCCGCGC CGGAGCCCGC GAATCCCTGT
CCGGACGACA AGGTGCATTG CGAGAAACAC CCCAGTTCCA TCACGGCGAT GGCCGAGGAC
GTTGCCAATG CGTCTGCCGG CACGGTGTTT TTCAATGCCG TATCCGGCAT GGGTGCGCTG
GATGCCGGGC TGAAAGCGGT CAGCGCGATC AACGGCGCAT CGGAATACAT CGCCGAGGGC
GTGAAGCACG TCACCATCAA CGGCCAGCCC GCCGCCCGCA GCGGCGCCCG TACCACCTGC
GAAGCAAAGG TGGTGGACGA GCCCGCCAGC GGCGCCGATG TTTCACCCGA TGTCAGGATC
GGCGGACCGC TTGCCGTCGT GCGTGAAATT CGCAGCGGCA AATCGCCCAT TGCGCTAATG
ATTGCGGTGG TTCTTGCTTT CATGGGCAAG GGCAGCGCGA CCTCGAAGTT TGGCTGTTTC
CTGTTTGGCA CCGGTGTAAG CGTCCTCACG CAGAAAGCCG GCGACGCACT GCGCGGTCTG
TACCACCGCG CCAGCAATGC CGTATTGCAA CCGGTGAATG CCGCAACGGG CGCCAAATAT
CTCGCCGGCG AGGAGGACCT CGACTTCAGT CTGCCGGGAC CCTTTGCGCT GGACTGGCAA
CGTATTTACA ACAGCCGCGA CGAGCGTCAC GGCGGTATGT TCGGCACCGG CTGGAGCGTG
CCGTTCGAAG TGGCGATGGA GGCGACACCG GGCGCGGAAG ATACCGACTG CTGGACCTTC
ATCGACGAAA CCGGGCGGCG GGTGAATCTG CAGGCGGTGC GGCCGGGCCA GGGATTCCGC
AGCCCGGGTG AAGGCCTGAG CGTTCGCCGC AGTGCTGCGG GCCACTGGCT GGTGGAAAGC
GACGAAGGTC TTTACCGCGT GTTCGAGCCC GATCCGCACA ATGCCGAACG TCAGCGCCTG
TTGCAGTTGA GCGATCGCAA TCGCAATGCA TTGCGGCTGC ACTACAACGA TGCCGGCCGG
CTCGAGGCGA TCGCCGACAG CACGGGTCAT CAGTGTGTGC GGCTTCACTA TGAGGAGCCG
GTACATCCAT ACCGCGTGAG CCGGTTGGAG CGGCTCTACG GCGAAGATCT GCAACAGCGC
GACGTGCTCG TGCGCTATCG CTATGACGCT GACGGCAATC TGGCCGAGGT GCGCAACCGT
GACGATACGA TTCTGCGTCA GTTTGCGTAC GATGCCGGCC ATCGCATGGT GATGCACCGG
CTGCCGGCGG GCATGGAATG CCACTATGGC TGGGGGCGCT TCGACGGCCC TGATGGCGAA
GAGTGGCGCG TCGTCGAACA CTGGACCGAT ACCGGCGAGC ACTACTGGCT GGACTATCAG
ATCGAGGCGC GCACCCTGCG GGTACGCGAC AGCCTGGGGC GCAGCACGTT CCGGCAATGG
GACGAGCTGT ATCAGATCAC CTGCTTCGAA GACGAACTCG GGCACGTGTC GCGCTTCGAG
TGGAGTCGCG AGCGGCAATT GCTGGCCGTG ACGGATGCGA AGGGCGGCGT ATGGCGTTGG
GATTACGACG AAGCCGGCCG CGTGAGCGCG GTCACCGATC CGCTCGGCCG GGTGGAGCAG
ACGCAATGGC ATCCGGTGTG GGCGCTTCCC ACGCTCGAAG CGGACACGGG CGGCAATACG
TGGCGGCATT TCTACGACGA GCGCGGCAAC CGCATCGTCA CGATAGACCC GTTGATGCAA
CGTACGCTCT ATCACCGCGA CGCACACGGA CAGGTCATGA TGATCACCGA CGCGCGCGGC
GGCGAGCGCC ATCTGCGTTG GAATGAAGAT GGCCAGTTGA GCAGTCATAC CGATTGTTCA
GGTTCGGTGA CGGCGTTCTA TTACGACGCG CGCGGCGCAC TCGAATGCGT GACCAATGCC
GAAGGCGACT GCACCCGCTA TCGGCGCGAT GCGTTGGGGC GACTCGTCAC GATGGTGCAT
CCCGATGGCA GGGAAGAGCG TTTCACCGTG GACGCGGCCG GACGGCTGCT GACACATACC
GATGCCAGCG GACGCACTAC CCGTTATCAG CGTGATCGGC GCGGCCTGGT GCAGGCGCGC
ATCGACGGTG CGGGGCATCG CGTGGGCTTC GAGTACGACA GCTACGGACG GCTGTTGGCG
CTAGTCAACG AGAACGGCGA ACGCTACGGC TTTGCCTACG ACGCGAAAAA CCGCCTGACG
CGGCAGACGG ATCTGGATGG CCGGCGTCAG GAGACGGATT ACGACGCGCT GGATCAGGTG
GCGGCGGTGC GATACGCCGC CGGCGGCGAC GCACAGATCG AGCATACGTT CGGTCGTGAC
GCGCTCGGCC GCCTGATTGG CCGGTACACG CCCGATGCGA TCACTTTCCA CGACTACGAT
GCCAGCGGCA ACCTGCTGAC GATCTCACGC AAGCGGCACG ACGCGCCGCG TAAGCGGGAC
GTGGAGGTGA TCGCATTCCG TTACGACCGT CTGGGGCGAC TGCTGGAGGA AGCGACGTCG
CAGGGGAAAC TGCGTCACGA ATACGATGTG CTGGGCAACC GGATCGCAAC GACTCTGCCC
GATGGACGCA CGATCAATCA TCTGTATTAC GGCAGCGGCC ACCTGCATCA GATCAATGTG
GACGGCGAAA CGGTCAGCGA CTTCCAGCGC GACCGTTTGC ATCGTGAAGT GCTACGCAGT
CAGGGCAAGC TGGACACGCG CAGCCTGTAC GACGTGAACG GGCGGCTGGC GCGCCGGCAG
AGTTATCGCG GCATGAATGG CGTGGTGCCG GACAGGGTGA TCGACCGCGG CTACCACTAC
GATGCGCTGG ACCGCCTGGT GAGCAAGCGC CACAGCTTGC AGCAGCAAAC CGTGTATCGC
TATGACGATA GCGGGCGCAT CAGCGGATGC CATAACGAGG CGTACTGGGA CACGCTGCAG
TACGACGCGG CCGCGAATCT CGTGGAAGTG CGGGAGCGTG CACGCGTGAA AGGCGAACCG
GCTCCGGTTG AGCGGGAAGG CAACGTGGTG CGTTTCAACC GGGTGCTGCG GTTTCGGGAT
CGACGCTACG AATACGATGC CCACGGACGC ACGGCGAGCC GGCTGACAGC GGCGGGGCTG
CAACGCTATC GATATGACGC GGAACACCGG TTGGTGGAAG TGAGTATCGA GCAGACCGGT
GGCCCGGTTC GGCGCTACGG TTACGCGTAC GACGCGGTGG GGCGGCGTGT TGCGAAGTTT
GCGATGGACG GGGATGGACA GCCTTTCGGG CGGACCCGTT TTCTGTGGGA CGGTATGCGG
ATGGTGCAGG AGGTGCGGGC GGACGGCGCC GATAGCTTGT ACCTGTACAA CGGCGAAGGC
AGTTACGAGC CGGTGGCCCG GATTGATGGC CGCAACGGGC TCGGGCATAG CATTTATTAC
TATCACACGG ATATCAATGG CGCACCGGAG GAACTGACCA GCGCGGACGG GCGGATCGTG
TGGCAGGCGA TGTATCAGCT GTGGGGCAAC ACCGTGCGCG AGAGCGAGCC GGAGAGCTAT
GCGGTGCGCC AGAATTTGCG GTACCAGGGG CAGTATCTGG ACCGGGAAAC GGGGCTGCAT
TACAACACGC TGCGGTATTA TGATCCGGAT ATTGGGAGGT TTACTACGCC TGATCCGATT
GGGTTGGCGG GTGGGGTGAA TCTGTATCGG TATGCGCCGA ACCCCATGTC GTGGATTGAT
CCGATGGGAT TGAGTTGCAC CAGCAACTTA AAAGATATTG AAAACCAACT TTCGCGTGGA
AAAGGTGCAA CGGTAACAGT TAGCTCTAAA GCAGAGGCGG AAGAGTTGCT CAGGGCTTAT
ACAAGTGGGC CAGCTGGAAG GCGAGGAGCG TTTAGAAATA CAACGGGGCA GGAATTTCCG
AGGGATCTAT TTGATCCAGA AAAAGTGGTG GGGCCGGGCT CAATTCCACA TAATGCGTCG
GATTGGCTTC CGGCTGGACG TGGTGCTTTC CAGAGAGAGG GAACATACCA TTGGGATGCC
GCCAATGCGG GAGCCAATCC AGGAGATCAT GCCTTGCTTG GAGATCACCT GCAAATTCAC
AATTTTGATG GGTCAATCAT TCGGATATTC TACTGA
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| Protein sequence | MGEAFWAARE GDALLHTSLM ADIAGGVLDV AINAAIMLAV DLAVGAAIAA APFTFGASAC
LAVGLVVGVG VGIGMSASGL SEGISSFCSD VGNAIFPPTV QGHISSGSAD TYVNGKRAAR
AAGILLTQEE IDAQVKAAAE APPRQQSIID IAGEALQWGQ AFISQMWRPA VAAPEPANPC
PDDKVHCEKH PSSITAMAED VANASAGTVF FNAVSGMGAL DAGLKAVSAI NGASEYIAEG
VKHVTINGQP AARSGARTTC EAKVVDEPAS GADVSPDVRI GGPLAVVREI RSGKSPIALM
IAVVLAFMGK GSATSKFGCF LFGTGVSVLT QKAGDALRGL YHRASNAVLQ PVNAATGAKY
LAGEEDLDFS LPGPFALDWQ RIYNSRDERH GGMFGTGWSV PFEVAMEATP GAEDTDCWTF
IDETGRRVNL QAVRPGQGFR SPGEGLSVRR SAAGHWLVES DEGLYRVFEP DPHNAERQRL
LQLSDRNRNA LRLHYNDAGR LEAIADSTGH QCVRLHYEEP VHPYRVSRLE RLYGEDLQQR
DVLVRYRYDA DGNLAEVRNR DDTILRQFAY DAGHRMVMHR LPAGMECHYG WGRFDGPDGE
EWRVVEHWTD TGEHYWLDYQ IEARTLRVRD SLGRSTFRQW DELYQITCFE DELGHVSRFE
WSRERQLLAV TDAKGGVWRW DYDEAGRVSA VTDPLGRVEQ TQWHPVWALP TLEADTGGNT
WRHFYDERGN RIVTIDPLMQ RTLYHRDAHG QVMMITDARG GERHLRWNED GQLSSHTDCS
GSVTAFYYDA RGALECVTNA EGDCTRYRRD ALGRLVTMVH PDGREERFTV DAAGRLLTHT
DASGRTTRYQ RDRRGLVQAR IDGAGHRVGF EYDSYGRLLA LVNENGERYG FAYDAKNRLT
RQTDLDGRRQ ETDYDALDQV AAVRYAAGGD AQIEHTFGRD ALGRLIGRYT PDAITFHDYD
ASGNLLTISR KRHDAPRKRD VEVIAFRYDR LGRLLEEATS QGKLRHEYDV LGNRIATTLP
DGRTINHLYY GSGHLHQINV DGETVSDFQR DRLHREVLRS QGKLDTRSLY DVNGRLARRQ
SYRGMNGVVP DRVIDRGYHY DALDRLVSKR HSLQQQTVYR YDDSGRISGC HNEAYWDTLQ
YDAAANLVEV RERARVKGEP APVEREGNVV RFNRVLRFRD RRYEYDAHGR TASRLTAAGL
QRYRYDAEHR LVEVSIEQTG GPVRRYGYAY DAVGRRVAKF AMDGDGQPFG RTRFLWDGMR
MVQEVRADGA DSLYLYNGEG SYEPVARIDG RNGLGHSIYY YHTDINGAPE ELTSADGRIV
WQAMYQLWGN TVRESEPESY AVRQNLRYQG QYLDRETGLH YNTLRYYDPD IGRFTTPDPI
GLAGGVNLYR YAPNPMSWID PMGLSCTSNL KDIENQLSRG KGATVTVSSK AEAEELLRAY
TSGPAGRRGA FRNTTGQEFP RDLFDPEKVV GPGSIPHNAS DWLPAGRGAF QREGTYHWDA
ANAGANPGDH ALLGDHLQIH NFDGSIIRIF Y
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