Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bxe_B1041 |
Symbol | |
ID | 4008470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia xenovorans LB400 |
Kingdom | Bacteria |
Replicon accession | NC_007952 |
Strand | + |
Start bp | 2215221 |
End bp | 2216297 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637951643 |
Product | OmpC family outer membrane porin |
Protein accession | YP_554263 |
Protein GI | 91779055 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.000439487 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTGA GCATGAAGAA GGCGACCGTC GGCGTGACTT GCGCCGGGCT CGCCGGGTTT GCAGCCAGCG CGCACGCGCA ATCGAGCGTG ACCTTGTACG GCATCGTCGA CGCGGGCGTC GAATACGTGA ACCATGCAAG CAAGGACGGC GGCGCCGCGC GCCTCGTGTC CGGCGGCAAG AACACTTCGC GCTGGGGTCT GCGCGGCGCG GAGGATCTCG GCGGCGGTCT GAAGGCGGTG TTCCAGTTGG AAAGCGGCAT CAACATCGCC AACGGCCAGT TCGACGACAG TTCCGGCGCG ATCTTCGACC GCCGTGCAAC CATCGGCCTG AAAAACCGCT TCGGGCAAAT CACGCTCGGC CGCAATTTCA CGACCACGTA CGACTACATG TTGCAGTTCG ACCCGATGGG TTACGCGCCG AACTACTCGT GGGCGACGTC ATCAACGGCG ACGGGCGGCC GCAAGGATGG GCTGTTCTCA CGCTCGTCCA ACGCGGTGCG TTATGACGGC ACCTTCTCCG GCTTCAAGTT CGGCGCGATG TACGGTTTCG GCAACGTGCC GGGCAGCATG AAGTCGAGTT CGAAGTACGA CTTCGCTCTT GGCTACGAGA CCGGTCCGTT CGCCGCGGTC GTGACCTTCG ACCGGCAGAA CGGCGCGAAC GACAGCGTAA CGCCCGCCGA TACCACCAAC TATATCCAGG GCATTCACGC AGGCCTGAGC TACGACTTCG GCCCCGTGAA GGCAATGGCC GGTTATCGGA ACTACCAGCG CACGTTCCAC ACCGCCGCGC CCACTTTGCG CAGCGACATG TACTGGCTCG GCGGTCAATA TGAGGTGACG CCGTTCATCT CGCTGTTCGC GGCGGTCTAC CATCAGGACA TCAAGGACGC GAGCGACGCC GATCCGACGC TGTTCTCGCT GCGCGCGCAA TACGCGCTGT CCAAGCGCAC GGTGCTGTAT ATGGCGGGCG GTTATGCGAT GGCCAGGCAT GACAACGCTG TCAGTCTGTC ACGCGATTTG ATCGGCGCGG CGGATACGCA AACTGGCGTG ACGGCGGGTA TTCAGCATCG TTTCTGA
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Protein sequence | MKLSMKKATV GVTCAGLAGF AASAHAQSSV TLYGIVDAGV EYVNHASKDG GAARLVSGGK NTSRWGLRGA EDLGGGLKAV FQLESGINIA NGQFDDSSGA IFDRRATIGL KNRFGQITLG RNFTTTYDYM LQFDPMGYAP NYSWATSSTA TGGRKDGLFS RSSNAVRYDG TFSGFKFGAM YGFGNVPGSM KSSSKYDFAL GYETGPFAAV VTFDRQNGAN DSVTPADTTN YIQGIHAGLS YDFGPVKAMA GYRNYQRTFH TAAPTLRSDM YWLGGQYEVT PFISLFAAVY HQDIKDASDA DPTLFSLRAQ YALSKRTVLY MAGGYAMARH DNAVSLSRDL IGAADTQTGV TAGIQHRF
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