| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0966 |
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| Symbol | |
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| ID | 4008545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | + |
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| Start bp | 2291213 |
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| End bp | 2294392 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637951718 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_554338 |
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| Protein GI | 91779130 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.216873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCA ACCTGTTCTT CCGGTTTCTC GGGCGCCTGC GCGTCGGCCG CAAGCTGCTG
CTGATCTATC TGCTCGACCT GAGCGCGGTG CTGTATATCA GCGGCATCCT GATCCACGAG
AAATACATTG CGATCGACTT CTCCGACAAG GAGCTGGTCG GCAACGCCTA CGTCGCGGCC
GTGCACGACG CGCTCGTCGA CTTTGCGCTC GCCGGGGCCG GAAAACCGCA GACGCCGGCC
CAATTGCAAC GCACGGCGAG CTGGCTCGCC GACGCGGAGC GCCGCTATGG CGCAAACATG
CAGAGCGCGG AAATCAACGC GCGCGTGCTG GCGGCCCTCA CGGCCAGCGC GGCGCCGCAT
GCGAGCGCCG CGACGGTGGA CGGCGGGCTC GAAGCGACAC GCGAACTGGT GACGCGGGTC
GGCAACCAGT CGAACCTGAT TCTGGACCCG GACCTCGACA GCTACTACTC GATGTCGCTG
TCGATCCTGC GCTATCCGGA GCTGCTCAGC GACGTCAACC GGATCGGCCG CCATCTGCAC
GATGCCGGCG CGAGTCTTCG CACCGCACGG ATGAGCCACG ACGAGATGCG GACCCGCTAC
CTCGTGCTGG AAGGACAGCT CGACGCGGTA TTGCAGGGGC TGCGCTCCGA CTATGCGGAA
GCCGCGGCCA CCAACGCCAC GCTGACCAGA ACCATCGGTC CACCGATCAC GCATATGCTC
GCCGCGATCG ACGCGTATCG CCGCGTGGCC GGCGCCGCGG TCGATGCCGG CTCGGATGCC
GCCACGCTCA CGGCGCTCGA TGCCGCGCAG CAGGGCGTGG TGATGAGCGT GAGCGACGCG
TGGAGCGCGA CCGGCAATCA GCTCGAAAGA CTGCTGCATG AACGCGTGCG CGGGCTCTTC
GAGCGGATGT GGCTGCACCT CGGCACCGCG TTGTTCCTGC TGTGCGCGAT CCTCAGCATG
GTGTATTTCG TCGCGCAGCA GATTTCGCGG CCACTGCGCC AGCTCGCGCG CGTGATGGAC
ACGGTGCGGC GTACGGGCGA CCATTCGCTG CGCGCCAGAT GGCATAGCCA GGACGAGATC
GGCCAGCTCG TGCGAGGCTT CAACGACATG CTCGCGCAAC TCGATCGCGA GCGCGACGTG
CAGAAGGAAC TCGCGGCGAC AGCGCGCGCC TCGGCCGCGC AGTACGCATT GGTCGAGGCG
ACTCCGGTGC CGATGGTCGT CACGGCGATC CCGGGGCATG AAGTGCTGCA CGCGAACAAG
CCCGCGCTTT ACTGGCTGAA TGGCTGCACG GTCGATCCGT GGGCCGTCGG CCTCGACTCG
GAGGTGCGCG CGCGCTTCTT CCAGCAGCTC TCCGACCGCG AGGCGGTCGA CGAATTCGAG
GTGCACTGGA AGGCCGCCAA AGAATCCACC TGGGCAATGC TGTCGGCGCG GCGTCTCGAC
TTCCAGGGGC GCGACGCCGT GCTGACCGCC TTCACGCCGA TCAACCAGAT CAAGCTGATG
GAGCAGCGCC TCGAATTGTG GGGCAAGGTG TTCGAAGCGT CATCCGAAGC CATTCTGATT
CTCGACGCGC AACGGCGGCT CGTGACCGCA AACGCATCGT TCTATCGCGC GACCGGCTAT
CGCGCCGACA ACGTGACGGG CAAGGAACCC GCTTTCCTGT TCGGCACGCA GGACCACGAC
GACATTCTTC CGGCCGTGAT CGATTCCGTC GACCGCCTGA GCGTATGGCA CGGCGAAGCG
CACGTACGGC GGCGCGCGGG CAGCGACTAT CCGGCGTGGC TGATGGTGAG CGCGGTGCGC
GACCGGCGCG CGAACCTGTC ACACTACATC TGCACACTGA TCGACATCAC GGACCGCAAG
AAGAGCGAGG CGCGCATCCA GTTCCTCGCC GAACACGACG TGCTGACGGA GCTGCCGAAC
CGCGAGCTGT TCGTGAAGCG CCTGGGCGTC GTGCTCGGCA ACGCGCGCCG CACGGGGCAG
CGCGTCGCGG TGCTGTTCAT CGACCTCGAC CGCTTCAAGA ACATCAACGA TTCGCTGGGC
CATCACATCG GCGACAGCCT TCTGCGCTCG GTCTCGCGAC GCCTGTTGCA GGCCGTGCGC
ACCAATGACA CGGTGAGCCG GCTCGGCGGC GACGAATTCA CGGTGATCCT GAACAGCGTC
AGCAACGCGG CGGACGTCAC GCGCACGATC GAGGAGCGTT TGCTGCCGCT CGTGCGCCAG
CCGCATGAGG TCGGCGGCGT CACGCTGCAG GTGTCGTGCA GTGTGGGCGT AGCGCTGTTC
CCCGACGACG GCGAGGACAT CGAGACGCTG ATGCAGAACG CCGACGCCGC GATGTACCAG
GCGAAGGGCG CCGGGCGCAA CCTCGTCAAG TTCTTCGCGC CCGACATCGC CGAGCGCACC
CGCTACCGGC TGACGCTCGA AGCCTGCCTG CGCAGCGCGA TCGCCATGCA CGAGTTCCGG
CTCGAATACC AGCCGTGCGT CGATGCGCAT ACGGGTGAAC TGGTCGCCGT GGAAGGTTTG
CTGCGCTGGA ACAGCCCGCA GATCGGCATC GTCTCGCCCG CGCAGTTCAT TCCGGTCGCG
GAAGATACGC GCCTCATCAT TCCGATCGGC GCGTGGGTGA TAAACGAAGC CTGCCAGCAG
ATCGCCGCGT GGGACGCCGA AGGTCTGACG CCGCTGCGTG TTTCGATCAA CCTGTCGGCG
ATCCAGTTGC GCGATCCGGA CCTGATCGGC ACGCTCGCGG ACAGTCTCGC GCGGCATGGC
GTCGCGCCGT GGCGGCTCGA ACTCGAGATC ACCGAAACCG TGCTGATGGA CAACGCGGAG
AACTATCTCA CCATGATCAA CGCGATCCGC GCGCTCGGGG TCAAGCTCTC GCTCGACGAT
TTCGGCATCG GCTACTCGAG CCTCAGCTAT CTGAACCGTT TTCCCCTCGA CCGGCTCAAG
ATCGATCGGG CGTTCGTGCT CGACATGCTC GATGCCCGCG CGGACCTCGC CATCGTCCGC
GCGATCATCG AACTGGGGCA CGAGCTGGGC TTGCGGGTGG TCGCCGAGGG CGTCGAAAGC
GAGCATCAGG CGCGCATCCT GCGCACGATC GGTTGCGACG AACTGCAGGG CTTTCTGTTC
TCCAAAGCGT TGTCGCCGGC CGATTTATGG TCGTGGACGA ACGCGCGCAA GGTGGCCTGA
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| Protein sequence | MKRNLFFRFL GRLRVGRKLL LIYLLDLSAV LYISGILIHE KYIAIDFSDK ELVGNAYVAA
VHDALVDFAL AGAGKPQTPA QLQRTASWLA DAERRYGANM QSAEINARVL AALTASAAPH
ASAATVDGGL EATRELVTRV GNQSNLILDP DLDSYYSMSL SILRYPELLS DVNRIGRHLH
DAGASLRTAR MSHDEMRTRY LVLEGQLDAV LQGLRSDYAE AAATNATLTR TIGPPITHML
AAIDAYRRVA GAAVDAGSDA ATLTALDAAQ QGVVMSVSDA WSATGNQLER LLHERVRGLF
ERMWLHLGTA LFLLCAILSM VYFVAQQISR PLRQLARVMD TVRRTGDHSL RARWHSQDEI
GQLVRGFNDM LAQLDRERDV QKELAATARA SAAQYALVEA TPVPMVVTAI PGHEVLHANK
PALYWLNGCT VDPWAVGLDS EVRARFFQQL SDREAVDEFE VHWKAAKEST WAMLSARRLD
FQGRDAVLTA FTPINQIKLM EQRLELWGKV FEASSEAILI LDAQRRLVTA NASFYRATGY
RADNVTGKEP AFLFGTQDHD DILPAVIDSV DRLSVWHGEA HVRRRAGSDY PAWLMVSAVR
DRRANLSHYI CTLIDITDRK KSEARIQFLA EHDVLTELPN RELFVKRLGV VLGNARRTGQ
RVAVLFIDLD RFKNINDSLG HHIGDSLLRS VSRRLLQAVR TNDTVSRLGG DEFTVILNSV
SNAADVTRTI EERLLPLVRQ PHEVGGVTLQ VSCSVGVALF PDDGEDIETL MQNADAAMYQ
AKGAGRNLVK FFAPDIAERT RYRLTLEACL RSAIAMHEFR LEYQPCVDAH TGELVAVEGL
LRWNSPQIGI VSPAQFIPVA EDTRLIIPIG AWVINEACQQ IAAWDAEGLT PLRVSINLSA
IQLRDPDLIG TLADSLARHG VAPWRLELEI TETVLMDNAE NYLTMINAIR ALGVKLSLDD
FGIGYSSLSY LNRFPLDRLK IDRAFVLDML DARADLAIVR AIIELGHELG LRVVAEGVES
EHQARILRTI GCDELQGFLF SKALSPADLW SWTNARKVA
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