| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0733 |
|---|
| Symbol | |
|---|
| ID | 4008778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | - |
|---|
| Start bp | 2549011 |
|---|
| End bp | 2550315 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637951951 |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_554571 |
|---|
| Protein GI | 91779363 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAGT TCCGCTTCGC GCGCGTTGCG ATCAGTCTGT TGTGCGCCAT TGCGAGTCCC
GCGTTTGCGA CCGACCTTCT CACCGTGACG CAACAGACGC TCGGCCGCGA CTCCAGCTTC
GCCCAAGCGC GGGCCGGCTA CGCGGCGGCA CAGCAGGCGG TTCCGCAGGC GCGCGCCGGC
CTGCTGCCGC AGATTTCCGC GGGTTGGGGG CGCACCTATA ACAGCATAGC GACAGATGGC
TTCCCGAAGA CGACTTACTG GCAGTCGGGA TGGACCATCA ATATCGCGCA GCCGTTGTTC
GACTGGACGA AATGGAGCAA CTACCGGCAA GCGGATTTTG TCGAAGCGCG CGGCACGGTC
GAAATGAATG CCGCGCAACA GGCTGCGATT CTGCGCGCCG TGCGCGTGTA TTTCGAAGCG
CTCGTTGCCG AAGACGAATT GAGGCGCGTC AGCGAATACG CGAGCGCCGT GGATCAGCAA
CTTCAATTGA TCAATCGGGG CAAAGCGGGC GGTGAAGCGA CGCTGATCGA TCTGCGCGAC
GCCCAGACCG CGCGTGAGAA GGTCGCGCTG GAACAGATGG ATGCGGAAAA TGCCCTGCGT
GCGAAGCGCC GGGCGTTCGA GCAAGCCACC GGCGTGCCGT TCGAAACGCT CGCGCGTTTG
CCTGACTCGT TGCCGATGCC GCGCCTGCAA CCCGAAGACA TCGATGCGTG GGCCGGCCAG
GCCAGGGATC ACGCGTTTGA GGTTCAACTG AAACAACTGG ACTGGCAGAT TGCGAAAATG
GAGGTGAGCA AGGCCACGTC GGCGCATCTG CCGTCGGTTT ATCTGACCGG AAGCTATACC
CCGGCCGGCG CGGCGTCCGG CTACTCGCGG CCCACCACCA CGACAACGGG TATGCTCGCC
ATCTCGATCC CGGTTTTCTC CGGCGGTGAG ACGCAGGCCA AGGTGAAGGC GTCTTCCGCG
CTGGAAGACA AGGCGCAAGA AGGCCTTGCA GGCGCGTCGC GCGACGCCGA GACCGCGGCG
CGCGACGATT ACAGCCGCTA CCAGTATGGA CGCACGCGAA TCGATCTGCT CACGCACCTC
GTGGCCTCTT CGCAGGAGGT GCTGGCGGCA ACCCGGATCG GCTTTCGGGT AGGGAGCCGC
ACGGCCAGCG ACGTACTGCG AGCGATCGAT GCGCTTTATT CCTCGCAACG CGATCTGCTG
GCCGCCCGCT ACGACGCCAT CGTCGCACTG ATGCAACTCA AAGGCGACAC GGCCGCCCTG
AGCATCACCG ACGTGGTCCA GATCAACGAC ATGCTGGTGC ACTGA
|
|---|
| Protein sequence | MFEFRFARVA ISLLCAIASP AFATDLLTVT QQTLGRDSSF AQARAGYAAA QQAVPQARAG
LLPQISAGWG RTYNSIATDG FPKTTYWQSG WTINIAQPLF DWTKWSNYRQ ADFVEARGTV
EMNAAQQAAI LRAVRVYFEA LVAEDELRRV SEYASAVDQQ LQLINRGKAG GEATLIDLRD
AQTAREKVAL EQMDAENALR AKRRAFEQAT GVPFETLARL PDSLPMPRLQ PEDIDAWAGQ
ARDHAFEVQL KQLDWQIAKM EVSKATSAHL PSVYLTGSYT PAGAASGYSR PTTTTTGMLA
ISIPVFSGGE TQAKVKASSA LEDKAQEGLA GASRDAETAA RDDYSRYQYG RTRIDLLTHL
VASSQEVLAA TRIGFRVGSR TASDVLRAID ALYSSQRDLL AARYDAIVAL MQLKGDTAAL
SITDVVQIND MLVH
|
|---|
| |