Gene Bxe_B0539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBxe_B0539 
Symbol 
ID4008972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia xenovorans LB400 
KingdomBacteria 
Replicon accessionNC_007952 
Strand
Start bp2766476 
End bp2767825 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content67% 
IMG OID637952139 
Productglucarate dehydratase 
Protein accessionYP_554759 
Protein GI91779551 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID[TIGR03247] glucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value0.492128 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.504058 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCGA AACCTTCCCA ATCGAACGAC ACGCCGGTCG TCACCGAACT GCGCGTCGTG 
CCTGTCGCCG GCCGTGACAG CATGCTGCTC AATCTGAGCG GCGCGCATGG CCCGTTCTTC
ACGCGCAACA TCGTCATCCT GCGCGACAGC GCTGGCCATA CCGGCGTGGG CGAAGTGCCG
GGCGGCGAGA GCATTCGCAA GACCATCGAC GACGCGCGTG CGCTCGTCGT CGGTCAGTCG
ATCGGCAATC TGCAGGCAGT CCTGAACAAG GTGCGCACAC AATTCGCCGA GCGCGACGCC
GGCGGCCGCG GTTTGCAGAC GTTCGATCTG CGCACCACCA TTCACGCGGT GACCGCGCTC
GAAGCCGCAT TGCTCGACCT GCTCGGCCAG CATCTGGGCG TGCCAGTCGC CGCACTGCTC
GGCGAAGGCC AGCAACGCGA CGAAGTGGAA ATGCTCGGTT ATCTGTTCTA TATCGGCGAC
CGCAACAAAA CCGACCTGGA CTATGCGAGC GGCGCCGATG CTCGCGACGA CTGGGAACGC
GTGCGCACCG AGCAGGCGCT GACGCCCGGG GCCGTCGTAC GGCTCGCCGA GGCCGCGCAG
GCGCGCTACG GCTTCAACGA CTTCAAGCTC AAGGGCGGCG TGCTGACTGG CGACGCCGAA
ATCGAAGCGG TCACCGCGCT CGCCGAACGT TTTCCGAACG CGCGCGTGAC GCTCGACCCG
AACGGCGCCT GGTCGCTGGC CGAAGCAGTG CGCCTATGCC GCGACAAGCA CGACGTGCTG
GCCTATGCGG AAGATCCGTG CGGCGCCGAA AACGGCTATT CGGGCCGCGA GGTGATGGCC
GAGTTCCGCC GCGCGACCGG CTTGCCGACG GCGACCAACA TGATCGCGAC CGACTGGCGC
CAGATGGGCC ACGCGATCCA GTTGCAGTCC GTGGATATCC CGCTGGCCGA TCCGCACTTC
TGGACCATGC AGGGCTCGGT GCGCGTCGCG CAGATGTGCA ATGACTGGGG CCTCACGTGG
GGCTCGCACT CGAACAACCA CTTCGACATT TCGCTCGCCA TGTTCACGCA TGTCGCGGCC
GCCGCGCCGG GCAGGATCAC CGCGATCGAC ACGCACTGGA TCTGGCAGGA CGGCCAGCGG
TTGACGCGCG AGCCGCTGCG GATCGTCGGC GGCAGGGTCA AGGTGCCGCA GGCCGCGGGG
CTCGGCGTCG AACTGGACAT GGATGAGATC GGCAAGGCGC ACGCGCTGTA TCAGCAGCAT
GGCCTGGGCG CGCGCGACGA CGGCGTGGCC ATGCAGTATC TGATCCCGAA CTGGAAGTTT
GATAACAGGC GCCCGTGCCT CGTGCGCTGA
 
Protein sequence
MSAKPSQSND TPVVTELRVV PVAGRDSMLL NLSGAHGPFF TRNIVILRDS AGHTGVGEVP 
GGESIRKTID DARALVVGQS IGNLQAVLNK VRTQFAERDA GGRGLQTFDL RTTIHAVTAL
EAALLDLLGQ HLGVPVAALL GEGQQRDEVE MLGYLFYIGD RNKTDLDYAS GADARDDWER
VRTEQALTPG AVVRLAEAAQ ARYGFNDFKL KGGVLTGDAE IEAVTALAER FPNARVTLDP
NGAWSLAEAV RLCRDKHDVL AYAEDPCGAE NGYSGREVMA EFRRATGLPT ATNMIATDWR
QMGHAIQLQS VDIPLADPHF WTMQGSVRVA QMCNDWGLTW GSHSNNHFDI SLAMFTHVAA
AAPGRITAID THWIWQDGQR LTREPLRIVG GRVKVPQAAG LGVELDMDEI GKAHALYQQH
GLGARDDGVA MQYLIPNWKF DNRRPCLVR