| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0394 |
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| Symbol | |
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| ID | 4009117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | - |
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| Start bp | 2933904 |
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| End bp | 2935790 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637952282 |
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| Product | sigma 70 (RpoD) |
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| Protein accession | YP_554902 |
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| Protein GI | 91779694 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.339768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGAAAG CGGTGCACGT GTCGATGGAA CAAGACTCAA GGGAAATGCA GTTGCGCGCG
TTGATGAAGC TCGGCAAGGA GCGCGGCTTC CTGACCCACA CCGAGATAGT CGACCACCTG
CCGGATTGCG TTGCACAGGC AGACGCCATT GAAGGAATCG TCAAAGCGTT TAACGACGTG
GGCATTGCCG TGCGCGATTT TGCGCCCACC GGCGACGCGC TTCTGCTGGG CGACGCTGCC
CAGCAATCAG CCCCGGACGA CGTCGCCGAA GACGAAACGG CCACGGCGCT GACAATCGCC
ATATCCGAAC CCGGTCCGGC AGCGGATCCG ATGCGCGCCT ATCTGCGCGA AATGGGCGCG
ACCCCGCTCC TGACGCGCGA AGGCGAAATT GCCGTCGCGC GTCGTATCGA AGCCTGCTTG
CGGGAAATGC TCGAGGTGAT CGCCTTGCGC CCCGCGACGG TCGACGCGAT ACTCTCGCGC
GCGGATCGTG TCGCGGCGGG CGAACTCGAT ATCGACGATC TGGTTGACGG ATTCCTCGAA
CAGCAGCCCG ACGAAATGCT CCCGGCAATG CAGGGTGCGA CGGCGGAGGG CGCCGCGGGC
AGCAAAGCCG ACAGCGGTGT TCCCACCAGC GCCAGCGAAT CAGCGGGCGC GATCGAGGCC
GATGAAGCCC GTATCGCCCG ATTGACGGCG GGCTGCAATG CGATCTTTTC GCAGGTGCGC
GAACAGCTTG CATCGTGGCG GGCAGCGGTT GCCGGAAGAA CCGGTCAGCG CGAAGAGGCA
CAGTCCACGC TCGTTCTGAT CGCATCGACA CTCGGGCAGA TCCGTTTCAG CGCACGGACA
ATCGGCGAAC TCAGTGCCGA CGTGCGGCGG GCGGTCGAGG AGATTCGCGG AATCGAGCGA
AACGTTTTGC GGCTCGCCGT GAATCAAGGC GGCATGGCGC GCGACATGTT CGTCGAAACC
TTCGTCGGAA GCGAAACCGA TCCTGAATGG CTTGCACGCG CAGCCGCAGC GGCGCCGGCG
TGCAGCGCGG CGTTGATGCG CTGCGCGCCT TCGATTCACA GCCAGCAGGA AAAACTCGCA
CAGATCGAGG CGCGCGAAGG TTTGTCGTTG CAGGAGCTGA AATGGATCAG CAGAAAGATG
AACGTGGCGG ACCGTGAGCT TCAGGACGCG CGCCGCGCGA TGATCGAAGC GAACTTGCGG
CTCGTCGTTT CAGTCGCAAA GAAATATGTT CAGAGCGGCA TGCCGTTGCT CGATCTGGTT
CAGGAAGGCA ACATCGGCTT GATGAAGGCC GTGGATCGTT TCGAATACCG GCGTGGCTTC
AAGTTCTCCA CGTACGCCAC CTGGTGGATC CGTCAGTCGG TCTCGCGAGC CATAGCGGAC
TACGGCCGTA CCATACGCGT ACCGGTTCAT ATGGCTGACG CCATGCACCG CGTCAAGAGG
GTGGCGGGCG AGATGCGCCA GGAAACCGGC CGCCCGGCCC GCTCCAGCGA ACTCGCGGCG
CGGCTTGGCA TGAGCGAGGA AAAGGTGCGC AGCGTGCAGC GAGTTACGAG GCAACCGGTA
TCACTCGATG TCCCGATCGG CGAAGAGGCG GACACCACGC TCGGTGAAAT GGTCGAGGAC
TCATCCACGC TGGCGCCGCT CGACGCATTG CTGCAAGCCG ATCTGCGCGT GGCCATCGAC
GCGGCGCTCG GCGTTCTGAC GCCGCGCGAA GCGAAAGTGA TCAAGCTACG CTTCGGTGTC
GATGCGGTTT CCGAACATAC GCTGGAAGAA CTCGGGGACC AGTTCGATGT CACCCGTGAA
CGGGTTCGTC AGATACAGAA CAAGGCATTG CAGAAGCTGC GTCATTCCGA TGGTATCAGC
ACGTTGAAAA ACTATCTCGA TCACTGA
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| Protein sequence | MEKAVHVSME QDSREMQLRA LMKLGKERGF LTHTEIVDHL PDCVAQADAI EGIVKAFNDV
GIAVRDFAPT GDALLLGDAA QQSAPDDVAE DETATALTIA ISEPGPAADP MRAYLREMGA
TPLLTREGEI AVARRIEACL REMLEVIALR PATVDAILSR ADRVAAGELD IDDLVDGFLE
QQPDEMLPAM QGATAEGAAG SKADSGVPTS ASESAGAIEA DEARIARLTA GCNAIFSQVR
EQLASWRAAV AGRTGQREEA QSTLVLIAST LGQIRFSART IGELSADVRR AVEEIRGIER
NVLRLAVNQG GMARDMFVET FVGSETDPEW LARAAAAAPA CSAALMRCAP SIHSQQEKLA
QIEAREGLSL QELKWISRKM NVADRELQDA RRAMIEANLR LVVSVAKKYV QSGMPLLDLV
QEGNIGLMKA VDRFEYRRGF KFSTYATWWI RQSVSRAIAD YGRTIRVPVH MADAMHRVKR
VAGEMRQETG RPARSSELAA RLGMSEEKVR SVQRVTRQPV SLDVPIGEEA DTTLGEMVED
SSTLAPLDAL LQADLRVAID AALGVLTPRE AKVIKLRFGV DAVSEHTLEE LGDQFDVTRE
RVRQIQNKAL QKLRHSDGIS TLKNYLDH
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