Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bxe_A4373 |
Symbol | dapF |
ID | 4005532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia xenovorans LB400 |
Kingdom | Bacteria |
Replicon accession | NC_007951 |
Strand | - |
Start bp | 106734 |
End bp | 107597 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637945277 |
Product | diaminopimelate epimerase |
Protein accession | YP_556679 |
Protein GI | 91781473 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTGA AATTCACCAA GATGCACGGC GCGGGCAACG ACTTCGTCGT GCTCGACGGC TACACCCAAC CGGTCAACCT GACGCCGGCG CAGGTGCGCG CGCTCGCGGA CCGGCATTTC GGCGTCGGCG CCGACCAGTT GCTGCTGGTC GAAAAGCCCA CGGTGGCCGG TGTCGATTTC AGATATCGCA TCTTCAATTG CGACGGCGGC GAAGTGGAGC ATTGCGGCAA CGGCGCGCGC TGCTTCGTCA AGTTCGTGCG CGAGCGCGGC CTCACCGATC AACGCAGCGT GCGCGTGCAG GTGCAGAAGG GCACCATCAC GCTGACCATG CAGGAAAACG GCGAAGTGCT GGTCGACATG GGCACGCCCG TGTTCGACCC GGAGCGCGTG CCGTTCGCCA CCAAAGGCCT CGAAGGCCGC CGCGAGGGAG CGGACACGCT CTGGCCGCTC GACGTGAGCG GCACGACACG GTGGATTTCG GTGGTCTCGA TGGGCAATCC GCACGCCGTG CAGGTCGTCG GCGACGTCGA AGCGTTCCCG GTGCTGGCCG AAGGCCCGGT GATCGAGCGT CATGCGCGTT TTCCGCAGCG GGTGAACGCG GGCTTCATGC AGATAGTCGG CCGCAATGAA ATCAGGCTGC GCGTGTACGA GCGCGGCGCG GGTGAAACGC TGGCGTGCGG CACGGGCGCA TGCGCGGCGG TCGCGGCCGG CATCCGGCGC GGGCTGCTCG ACTCACCCGT GCGCGTGCAC ACGCACGGCG GCGACCTGAC CATCTCGTGG GACAGCACGC GAGAAGGCGA ACCGCTACTC ATGGCCGGAC CGGCCGTGAC CGTTTTCGAA GGCGAGATCG AGCTGCCCGA CTGA
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Protein sequence | MKLKFTKMHG AGNDFVVLDG YTQPVNLTPA QVRALADRHF GVGADQLLLV EKPTVAGVDF RYRIFNCDGG EVEHCGNGAR CFVKFVRERG LTDQRSVRVQ VQKGTITLTM QENGEVLVDM GTPVFDPERV PFATKGLEGR REGADTLWPL DVSGTTRWIS VVSMGNPHAV QVVGDVEAFP VLAEGPVIER HARFPQRVNA GFMQIVGRNE IRLRVYERGA GETLACGTGA CAAVAAGIRR GLLDSPVRVH THGGDLTISW DSTREGEPLL MAGPAVTVFE GEIELPD
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