Gene Bxe_A3992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBxe_A3992 
SymbolsecD 
ID4002083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia xenovorans LB400 
KingdomBacteria 
Replicon accessionNC_007951 
Strand
Start bp524856 
End bp526943 
Gene Length2088 bp 
Protein Length695 aa 
Translation table11 
GC content66% 
IMG OID637945659 
Productpreprotein translocase subunit SecD 
Protein accessionYP_557059 
Protein GI91781853 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.725975 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.167687 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGTT ACCCCCTCTG GAAATATGCC GTGATGCTGG TGGCTCTGGT CATCGGCCTC 
GTGTACACGC TGCCCAACCT GTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG
GCAACGGTCA AGCTCGACTC GACCACGCTG TCGGCTGTCG AAGCCGCGCT CGCCGCGAAT
CAGATCAAGC CGGACGACGT CACGTTCGAC AACTCGGCGA CCAACGCGAA CATCCGCGTG
CGTCTGCCGG ACACCGACAC GCAGCTGCGC GTGAAGGACC TGCTGCAGAA GTCGCTGAAC
AGCGACCCGA GCGACCCGCA GTACATCGTC GCGCTGAATC TGCAAAGCGC GTCGCCGCGC
TGGCTGACCG CCTTGCACGC GCTGCCGATG TACCTCGGCC TCGATCTGCG CGGCGGCGTT
CACTTCCTGC TGCAGGTCGA CATGGCCGGC GCGCTGAACA AGAAGCTCGA TTCGGACGCT
TCGGACGCGC GCACGCTCCT GCGTGACAGC AATATCCGCG ACGGCGGCGT GAACCGCGTG
AACCAGACGG TGGTGATCAA TTTCGCCGAC CAGGCGACGG CGGACATCGC ATCGAAGCAA
CTGGGCCGCA GCATCAGCGA ACTCCAGTGG GCCTCGCAAA CCGGTCCCGA CGGCGGCGTG
CAACTGGTCG GCACGTTCAC GCCGACAGTG CAGAAAGCCG TGCAGGACGC CGCGCTCAAG
CAGAACATCA CCACGCTGCA TAACCGCGTG AACGAACTCG GCGTGGCCGA GCCGGTGATC
CAGCAGCAAG GCTCCGACCG TATCGTGGTC GAACTGCCGG GCGTGCAGGA CACGGCGAAG
GCGAAGGACA TCATCGGCCG CACGGCAACG CTCGAAGCGC GCTTGGCCGA CCCGGTCAAC
ACGCATCCGA ACCCGTCCGA TCCGGTGCCG CCGGGCGACG AACTGTTCAC GCAGGGCAAC
CAGACGCCGG TACTGCTGCG CAAGCAGATC ATCTTCACGG GCGACCGGAT TATCGACGCG
TCGGCGGGCT TCGACGAGCA TCAACGTCCT TCCGTCAACA TCCGTCTGGA TTCGGCCGGC
GGCCGTGCGG TCGCCAGCGT GTCGCGCGAC AACATCGGCA AGCCTATGGC GATGGTGCTG
TTCGAAAAGG GCAAGGGCGA AGTGCTGACG GTGGCGACCA TCCAGTCGGA ACTGGGCGAC
CGCTTCCAGA TCACCGGCCA GGCCACGCCG CAAGGCGCCG CCGACCTCGC GCTGCTGCTG
CGCGCTGGTT CGCTGGCCGC GCCGATGGAC ATCATCGAAG AACGCACGAT CGGCCCGAGC
CTCGGCGCGG ACAACATCAG GAAGGGCTTC CACTCGGTGG TGTGGGGCTT CGCGGCGATC
GCCGTCTTCA TGATCGCGTA CTACATGCTG TTCGGCGTGA TCTCCATGAT CGGCCTGTCG
GTCAACCTGC TGCTGCTGAT CGCGGTGCTG TCCATGCTGC AGGCCACGCT CACCCTGCCG
GGTATCGCCG CTATCGCGCT CGCACTCGGT ATGGCGATCG ACGCGAACGT GCTGATCAAC
GAGCGGGTGC GCGAGGAACT GCGCAACGGC GCGCCGCCGC AACTGGCCAT CCAGAACGGC
TACGCGCACG CCTGGGCAAC GATTCTCGAC TCGAACGTCA CCACGCTGAT CGCCGGTATC
GCGCTGCTCG CATTCGGCTC GGGGCCGGTG CGCGGCTTTG CGATCGTGCA CTGTATCGGC
ATTCTCACGT CGATGTTCTC GGCGGTGTTC TTCTCGCGCG GCATCGTCAA CCTCTGGTAC
GGCGGCAAGA AGAAGCTGAA GTCGCTGGCC ATCGGCCAGG TGTGGCGTCC GGATACGGCG
CCCGCAGGCT CGGCGGCTTA CCTCGGTAGC GAAGACGCCT CCACCGACAC CGCGCAAGCC
GTCGCCGCGG TCGCCGCCAA GCCGTCGAAG GCGAGAGCCG CGGTCGCGCA GGCACGCGCC
GGCAAGCCGA CCGTACGCCG CCGCAATGCG CCGGGGTCGT CGACCGGTAC GCCGGGTTCA
TCGCCGGGTT CCACGAATAC ACCGCAGAAA CCGGGTTCGT CCCGCTGA
 
Protein sequence
MNRYPLWKYA VMLVALVIGL VYTLPNLFGE APAVQVSSGK ATVKLDSTTL SAVEAALAAN 
QIKPDDVTFD NSATNANIRV RLPDTDTQLR VKDLLQKSLN SDPSDPQYIV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMAG ALNKKLDSDA SDARTLLRDS NIRDGGVNRV
NQTVVINFAD QATADIASKQ LGRSISELQW ASQTGPDGGV QLVGTFTPTV QKAVQDAALK
QNITTLHNRV NELGVAEPVI QQQGSDRIVV ELPGVQDTAK AKDIIGRTAT LEARLADPVN
THPNPSDPVP PGDELFTQGN QTPVLLRKQI IFTGDRIIDA SAGFDEHQRP SVNIRLDSAG
GRAVASVSRD NIGKPMAMVL FEKGKGEVLT VATIQSELGD RFQITGQATP QGAADLALLL
RAGSLAAPMD IIEERTIGPS LGADNIRKGF HSVVWGFAAI AVFMIAYYML FGVISMIGLS
VNLLLLIAVL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG APPQLAIQNG
YAHAWATILD SNVTTLIAGI ALLAFGSGPV RGFAIVHCIG ILTSMFSAVF FSRGIVNLWY
GGKKKLKSLA IGQVWRPDTA PAGSAAYLGS EDASTDTAQA VAAVAAKPSK ARAAVAQARA
GKPTVRRRNA PGSSTGTPGS SPGSTNTPQK PGSSR