Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bxe_A3992 |
Symbol | secD |
ID | 4002083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia xenovorans LB400 |
Kingdom | Bacteria |
Replicon accession | NC_007951 |
Strand | - |
Start bp | 524856 |
End bp | 526943 |
Gene Length | 2088 bp |
Protein Length | 695 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637945659 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_557059 |
Protein GI | 91781853 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.725975 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.167687 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTT ACCCCCTCTG GAAATATGCC GTGATGCTGG TGGCTCTGGT CATCGGCCTC GTGTACACGC TGCCCAACCT GTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG GCAACGGTCA AGCTCGACTC GACCACGCTG TCGGCTGTCG AAGCCGCGCT CGCCGCGAAT CAGATCAAGC CGGACGACGT CACGTTCGAC AACTCGGCGA CCAACGCGAA CATCCGCGTG CGTCTGCCGG ACACCGACAC GCAGCTGCGC GTGAAGGACC TGCTGCAGAA GTCGCTGAAC AGCGACCCGA GCGACCCGCA GTACATCGTC GCGCTGAATC TGCAAAGCGC GTCGCCGCGC TGGCTGACCG CCTTGCACGC GCTGCCGATG TACCTCGGCC TCGATCTGCG CGGCGGCGTT CACTTCCTGC TGCAGGTCGA CATGGCCGGC GCGCTGAACA AGAAGCTCGA TTCGGACGCT TCGGACGCGC GCACGCTCCT GCGTGACAGC AATATCCGCG ACGGCGGCGT GAACCGCGTG AACCAGACGG TGGTGATCAA TTTCGCCGAC CAGGCGACGG CGGACATCGC ATCGAAGCAA CTGGGCCGCA GCATCAGCGA ACTCCAGTGG GCCTCGCAAA CCGGTCCCGA CGGCGGCGTG CAACTGGTCG GCACGTTCAC GCCGACAGTG CAGAAAGCCG TGCAGGACGC CGCGCTCAAG CAGAACATCA CCACGCTGCA TAACCGCGTG AACGAACTCG GCGTGGCCGA GCCGGTGATC CAGCAGCAAG GCTCCGACCG TATCGTGGTC GAACTGCCGG GCGTGCAGGA CACGGCGAAG GCGAAGGACA TCATCGGCCG CACGGCAACG CTCGAAGCGC GCTTGGCCGA CCCGGTCAAC ACGCATCCGA ACCCGTCCGA TCCGGTGCCG CCGGGCGACG AACTGTTCAC GCAGGGCAAC CAGACGCCGG TACTGCTGCG CAAGCAGATC ATCTTCACGG GCGACCGGAT TATCGACGCG TCGGCGGGCT TCGACGAGCA TCAACGTCCT TCCGTCAACA TCCGTCTGGA TTCGGCCGGC GGCCGTGCGG TCGCCAGCGT GTCGCGCGAC AACATCGGCA AGCCTATGGC GATGGTGCTG TTCGAAAAGG GCAAGGGCGA AGTGCTGACG GTGGCGACCA TCCAGTCGGA ACTGGGCGAC CGCTTCCAGA TCACCGGCCA GGCCACGCCG CAAGGCGCCG CCGACCTCGC GCTGCTGCTG CGCGCTGGTT CGCTGGCCGC GCCGATGGAC ATCATCGAAG AACGCACGAT CGGCCCGAGC CTCGGCGCGG ACAACATCAG GAAGGGCTTC CACTCGGTGG TGTGGGGCTT CGCGGCGATC GCCGTCTTCA TGATCGCGTA CTACATGCTG TTCGGCGTGA TCTCCATGAT CGGCCTGTCG GTCAACCTGC TGCTGCTGAT CGCGGTGCTG TCCATGCTGC AGGCCACGCT CACCCTGCCG GGTATCGCCG CTATCGCGCT CGCACTCGGT ATGGCGATCG ACGCGAACGT GCTGATCAAC GAGCGGGTGC GCGAGGAACT GCGCAACGGC GCGCCGCCGC AACTGGCCAT CCAGAACGGC TACGCGCACG CCTGGGCAAC GATTCTCGAC TCGAACGTCA CCACGCTGAT CGCCGGTATC GCGCTGCTCG CATTCGGCTC GGGGCCGGTG CGCGGCTTTG CGATCGTGCA CTGTATCGGC ATTCTCACGT CGATGTTCTC GGCGGTGTTC TTCTCGCGCG GCATCGTCAA CCTCTGGTAC GGCGGCAAGA AGAAGCTGAA GTCGCTGGCC ATCGGCCAGG TGTGGCGTCC GGATACGGCG CCCGCAGGCT CGGCGGCTTA CCTCGGTAGC GAAGACGCCT CCACCGACAC CGCGCAAGCC GTCGCCGCGG TCGCCGCCAA GCCGTCGAAG GCGAGAGCCG CGGTCGCGCA GGCACGCGCC GGCAAGCCGA CCGTACGCCG CCGCAATGCG CCGGGGTCGT CGACCGGTAC GCCGGGTTCA TCGCCGGGTT CCACGAATAC ACCGCAGAAA CCGGGTTCGT CCCGCTGA
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Protein sequence | MNRYPLWKYA VMLVALVIGL VYTLPNLFGE APAVQVSSGK ATVKLDSTTL SAVEAALAAN QIKPDDVTFD NSATNANIRV RLPDTDTQLR VKDLLQKSLN SDPSDPQYIV ALNLQSASPR WLTALHALPM YLGLDLRGGV HFLLQVDMAG ALNKKLDSDA SDARTLLRDS NIRDGGVNRV NQTVVINFAD QATADIASKQ LGRSISELQW ASQTGPDGGV QLVGTFTPTV QKAVQDAALK QNITTLHNRV NELGVAEPVI QQQGSDRIVV ELPGVQDTAK AKDIIGRTAT LEARLADPVN THPNPSDPVP PGDELFTQGN QTPVLLRKQI IFTGDRIIDA SAGFDEHQRP SVNIRLDSAG GRAVASVSRD NIGKPMAMVL FEKGKGEVLT VATIQSELGD RFQITGQATP QGAADLALLL RAGSLAAPMD IIEERTIGPS LGADNIRKGF HSVVWGFAAI AVFMIAYYML FGVISMIGLS VNLLLLIAVL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG APPQLAIQNG YAHAWATILD SNVTTLIAGI ALLAFGSGPV RGFAIVHCIG ILTSMFSAVF FSRGIVNLWY GGKKKLKSLA IGQVWRPDTA PAGSAAYLGS EDASTDTAQA VAAVAAKPSK ARAAVAQARA GKPTVRRRNA PGSSTGTPGS SPGSTNTPQK PGSSR
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