| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A3119 |
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| Symbol | |
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| ID | 4002774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | + |
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| Start bp | 1482444 |
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| End bp | 1484522 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637946521 |
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| Product | putative membrane low calcium response protein, LcrD, Type III secretion |
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| Protein accession | YP_557912 |
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| Protein GI | 91782706 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.376971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0044205 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGAACC GTTCCATTCT CAGCCGCTAC GATCTGTCGG CTTTTTTTGC GCGTCATGCG
GACCTCGCCG TCGGCATCGG CATTCTGGCG GTTCTTGCCT TGCTGATCGT GCCGGTGCCG
CCGTTCGTGC TCGATCTGTT CATCTGCGTG AGCTTCGCCG CCGGGCTGAC GATGCTCACC
ACCACGCTGT ATGTGTCGAA AGCCGCGGAT CTCGCGAGCT TTCCGTCGCT GCTGCTGATC
ACGACGTTGC TGCGCCTCGC GCTGGCCATC GCCTCCACCA AGATGATCCT GCTTCATGCG
CACGCCGGCC AGATCATCGG CGCGTTCGGT GAAATGGTGG TGGGCGGCAA TGTGGCGGTC
GGCCTCGTGG TTTTCGTGGT GCTGGCGGCG ATCCAGTTCA TCGTCGTGGC GAAAGGCGCG
GACCGTGTCG CGGAAGTGGC GGCGCGCTTC ACGCTCGACG GCATTCCGGG GCGGCAGATG
AGTATCGACG CCGATATGCG CAACGGTGTG GTCACGCCCG CCCAGGCGAG CCGTCTGCGC
GCGTCGCTCG AACGCGAAAC CTATTTCTAC GGCTCGCTCG ACGGCGCGAT GAAGTTCGTC
AAGGGCGATG CGGTGGCGGG CCTCGTGGTG GCGCTGGTGA ATATCGTCGG CGGACTGGCG
GTCGGTATCG CGCAGCGCGG CATGTCGTTC GGCGACGCGC TGCGCACGTA CACGATTCTG
ACGGTCGGCG ACGGCCTCGT GTCGCAGATT CCGTCGCTGA TCGTCTCGGT GGCCGCGGGT
ATTCTGGTCA CCCGGGTGAG CGCGGCCGAC GGCGCCGACG CCCATCTCGG CAGTGACATT
TACAGGCAAC TGGCGGCGCA TCCGAAAGCG ATCGGCATGG CCGGCGTGGC GTGTCTTTCT
CTGGGTGTGA TTCCAGGTTT TCCGCATGTC CAGTTCCTGG TGGCCGGCGG CTTGCTGCTC
GCGCTCGCGA TCACGCTGAT GCGCAACGCC GCGCTCGCGA CCAACTCGCA GCGCGCGCTG
ATGCCCGGCT TGACGCGCGA CGGCGGCAAC TACGTGCCGC GTATTCTCGA CGACGTCGAG
TTGGGTACAA GCGCGGCGTT GCGCTTGCGG CTCGGTCTGG AGGCGTTCGA CGCGTTGCGG
CCCGAGGCGC TGAACCGCCA GCTCGGTCAA TTGCGCCGCA AGCTGATGGT CGAGCTGGGC
GTGCCGTTTC CGGGTCTCGC GTTGCTGCGT GATGCGCGGC TCGCGCCCGA GCGCTACGTC
GTGGATATCG AAGACGTGCC GTTTGCGAGC GGCACGCTGG TCGACGCGCA CACGCTGGTG
AGCGGTGACG AGAGCCGCGT CGTGTTCGAC GGCGTGGCGG GCTACCGGCC GCGCGCGGCG
AAATCGGTCT GGGTGCCGAG CGCGACGGCG GCCTCGCTCG ACGATCCTGA GCTCCACAAG
GCGAGTGTCG ACGAGGCGCT GTGCGATCAC CTCGCGGAAG TCTGCGAGCG TTCGGCGGCC
GATTTTCTCG GCGTCCAGGA GACGCGCTTT CTGCTCGATC AGCTGTCGAT CGAATTTCGC
GAGCTGGTCG CTCAAGTGGG GCAGACCGTG AACACGGTGC AGCTCGCCGG TGTGCTGCGC
CAGTTGCTGC AGCAGCGCGT GCCGATCCGC AATCTGCGCG CGATTCTCGA AGCCGTCGTC
CGCGTGCCGG CGGCCGAGCG CACCACCGAC CGGATGGTGC GGCAGGCGCG CATCCAGCTG
GGGCCGCAGA TCGCGCGCGG CTATGCCGAC CTGGAGTCAT GGACGATCTT CGCGGCGGTG
CTGGAGCCCT CCTGGGAAGC CGAGCTCGAA GCGCAGATCA GAAGCGGGGT CGACGGTGAA
CCGCAATGCG TGCTTTCGGT GGAGGAACTG GAGCGTGCGC AACGGGTTTT CGCCATCGAC
ATGAACGGGG TCGCGCTGAT CGTGACGAAT GCGGTTTTGC GTCCGCATCT GGCGAGGCTG
CTGCACGACT TCGGGCGGCG CGTCGACGTA TTGGCCATCG AAGAGATTCC GCTCGACGTG
TACCGTGTCG AGGCCGTTGC GACGCTGGGC GACGCATGA
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| Protein sequence | MSNRSILSRY DLSAFFARHA DLAVGIGILA VLALLIVPVP PFVLDLFICV SFAAGLTMLT
TTLYVSKAAD LASFPSLLLI TTLLRLALAI ASTKMILLHA HAGQIIGAFG EMVVGGNVAV
GLVVFVVLAA IQFIVVAKGA DRVAEVAARF TLDGIPGRQM SIDADMRNGV VTPAQASRLR
ASLERETYFY GSLDGAMKFV KGDAVAGLVV ALVNIVGGLA VGIAQRGMSF GDALRTYTIL
TVGDGLVSQI PSLIVSVAAG ILVTRVSAAD GADAHLGSDI YRQLAAHPKA IGMAGVACLS
LGVIPGFPHV QFLVAGGLLL ALAITLMRNA ALATNSQRAL MPGLTRDGGN YVPRILDDVE
LGTSAALRLR LGLEAFDALR PEALNRQLGQ LRRKLMVELG VPFPGLALLR DARLAPERYV
VDIEDVPFAS GTLVDAHTLV SGDESRVVFD GVAGYRPRAA KSVWVPSATA ASLDDPELHK
ASVDEALCDH LAEVCERSAA DFLGVQETRF LLDQLSIEFR ELVAQVGQTV NTVQLAGVLR
QLLQQRVPIR NLRAILEAVV RVPAAERTTD RMVRQARIQL GPQIARGYAD LESWTIFAAV
LEPSWEAELE AQIRSGVDGE PQCVLSVEEL ERAQRVFAID MNGVALIVTN AVLRPHLARL
LHDFGRRVDV LAIEEIPLDV YRVEAVATLG DA
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