Gene Bxe_A3034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBxe_A3034 
Symbol 
ID4002167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia xenovorans LB400 
KingdomBacteria 
Replicon accessionNC_007951 
Strand
Start bp1553335 
End bp1556124 
Gene Length2790 bp 
Protein Length929 aa 
Translation table11 
GC content63% 
IMG OID637946607 
Productputative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with PAS/PAC and Chase sensors 
Protein accessionYP_557997 
Protein GI91782791 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.124331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000356382 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
GTGCGCTCCG TCCTGCTGCC GCTGTTCGTG CTGACCGCGT CGCTCTGCGT GACGTGGACG 
GTATGGAATC ACGAACGGCA AGCAACCAGC AAAGAGCTGC GCACCCAGTT TGATTACACC
CTGGGCGATG CCGTCAGCCG CATCGAACAG CGCATGGCGA GCTACGAGCT CATGCTGCGG
GGCGTGCAGA GTCTGTTTGC CGCGAACGGA ACGATCGACC GCGACAGGTT CCGGCGCTAT
GTCGGCGCGC TCAATCTCGA CGCGAACTTC TCCGGGATCC ACGCCGTCGG CGTCGTCGAA
TGGGTGCCGG CGGCGCAGAA GGCGGGCCAC GTGGCGAGAA TGCGCGAGGA AGGCGTTCCC
GGCTATACGA TCCTGCCCGA AGGGCAGCGT GAGGACTATG CGCCGCTCGT TCAGCGCGAG
CCTTATGTCG GCATCACGCA AAGCTCGCCC GGCTTCGACA CCTGGAGCGA TCCGGTGCGG
CGCGCCGCGA TGGAGCGAGC CCGCGACTCC GGCATGGCGG CGCTTTCGGG AACGGTGCAC
CTTTTGATCG ACGCGGATTC GGACCTCCGG CCGGGTTTCA TCATGTACCT GCCGATCTAT
GCGTCCGGTG AAACGCAGGA GAGCGTTCTG CAGCGGCGGG CGCACATTAC CGGCTGGGTC
TACGCATCGT TCCGTATGCA CGACGTGATG GCGAGCCTCT ATGGCGAACA GCCCGCCGGC
GTCTCGCTGG CCGTTTACGA CGGCGTAGCG GCATCGGACG CAGCGCTTCT ATATCGCACC
CCGGCTGCGA ACGGGTGGCA TGCGCCCGCG CTGATGTCCG CAAACGAATA CCTGGTCGTG
GACGGGCGCG ACTGGATGCT GTCGATGGAC GCCTCGGACG AATTCCGCTC CCGGCTGGGC
AGTAACGCGG AGCCGTTGAT TGCAGGTGCC GGAATCGGGC TGAGTCTGCT GCTGGCGCTG
CTGACCTGGC TGATGGTGAC AGGGCGTGAG CGCGCCATCC GTCTGGCTTC GGGGATGACA
CGGGAGTTGC GCGAGAGCGA AGAGAAGTTT CGCGCCATTG CGGATTGCAC GGTGAATCTG
GAGATCTGGT GGGGACCGGA CGGGAAACCG CGCTGGATCA ATCCGTCTGT CGATCACTAC
ACGGGCTACA CGGTCGCCGA ATGCATGGCC ATGCCGAACT TCGCGCGCAC GCTGATTCAT
CCGGATGACG TGGAGCGTGT TGCGCCGGAA TTTCAGAAAG GACTTCAGGG CTTTCGCGGC
GACGATCTCG AGTTTCGTTG CGTGCGCAAG GATGGTTCGC TGCTGTGGCT CTCGCTCTCG
TGGGTTCCGA TCAGCAATGC GAGGGGCGAC TTCGTCGGCT TTCGCACGAG CGGGCGCGAT
ATCACCGAGC GCAAGAAGTC GGAAGAGAAG ATCCGGGAAC TGGCCTTCTA CGACACGCTG
ACCCGCCTGC CCAATCGCGC ACTTCTTCTG GACCGGCTGA GGGAGTCGAT GGCGGCCAGC
CGCGAGAACA ACGTCTGCGG CGCGCTCATG TTCATCGATC TCGATCACTT CAAGACGTTG
AACGATACGC TCGGCCACGA CAAAGGCGAT CTGCTGCTGC GGCACGTCGC GTACCGGCTG
TCCAGCAGTG TCAGCAAGGG AGACACAGTC GCGCGGGTGG GCGGTGACGA GTTCGTTGTC
GTGCTGGGCA ATCTGAGCCT GAACAAGGCG GCCGCGACCG CGGAGACCGA GGCGGCGGGA
GAGAAAATCC TCGCCGTGTT GGGCCGTGCC TACGAGCTCA ACGGGGTTCA GTTCCGCAGT
ACCGCCAGCA TCGGCGTCAC CGTCTTCAAC GGAGAGCAGA CCTCCACTGA CGAACTGTTC
AAACAGGCCG ATCTCGCCAT GTATAAATCG AAGGAGCGCG GCCGCAATGC CATGTGCTTC
TTCGATCCCG CCATGCAAAC GACGGTGCTC AAGCGAGCCG AGCTCGAGGT GGGCTTGCGC
AGTGCGATCG AGGAGAACCG CTTCGTTCTG CACTATCAGG CGCAAGTCGT CGACGGCGAT
CATATAACGG GTGCCGAGGC ACTCGTGCGT TGGGAGCATC CGGTGTGCGG CCTGATACCT
CCGGCGGAGT TCATTCCGCT TGCGGAGGAA ACGGGCCTCA TCCTCGAGAT AGGGCGAATG
GTGTTGGAGT CCGCATGTGC GCAACTCGCG CTGTGGGCAA CAGAGCCGCA GATGGCGCAT
CTGTCGATCG CAGTGAACGT GAGCGCCCGG CAATTCCGTG AGCCGGACTT CGTGGAGAGC
GTGCTGGGTG TGATCAACCG GAAAGGAGCG AGGGCGGACC GGCTGAAGCT GGAACTGACC
GAGAGCGTGC TCGTTGAAAA CGTCGAGGAC ATTATCGAAA AGATGGGCGC TCTTCGAGCG
CGGGGCGTGA CGTTCTCTCT GGATGACTTC GGCATTGGAT ACTCCTCGCT GTCCTACCTG
AAACGGTTGC CGTTGGACCA GCTGAAAATC GACCGCTCCT TCGTGCGCGA CATCCTGGAA
GACCCCAACG ACGCGGACAT TGCGAGAACC ATCGTGGCGC TTGCCCGCAG TTTCGATCTC
GGCGTCATCG CCGAGGGCGT CGAGACCGAG GCGCAAAGAG ACTTTCTTGC GGTAGCAGGA
TGCCATGCCT ATCAGGGGTT TCTTTTCTGC AAACCGCTTC CCGTGCGGAG TTTCGAGCAG
TTCGTGGCGA GCTTCGAATG CCGGGACCGG ATGGCAGACC GGCGGCGTGG TCGCGATGAG
AGAAGCGTCG ATTCAGATAC GATGACCTGA
 
Protein sequence
MRSVLLPLFV LTASLCVTWT VWNHERQATS KELRTQFDYT LGDAVSRIEQ RMASYELMLR 
GVQSLFAANG TIDRDRFRRY VGALNLDANF SGIHAVGVVE WVPAAQKAGH VARMREEGVP
GYTILPEGQR EDYAPLVQRE PYVGITQSSP GFDTWSDPVR RAAMERARDS GMAALSGTVH
LLIDADSDLR PGFIMYLPIY ASGETQESVL QRRAHITGWV YASFRMHDVM ASLYGEQPAG
VSLAVYDGVA ASDAALLYRT PAANGWHAPA LMSANEYLVV DGRDWMLSMD ASDEFRSRLG
SNAEPLIAGA GIGLSLLLAL LTWLMVTGRE RAIRLASGMT RELRESEEKF RAIADCTVNL
EIWWGPDGKP RWINPSVDHY TGYTVAECMA MPNFARTLIH PDDVERVAPE FQKGLQGFRG
DDLEFRCVRK DGSLLWLSLS WVPISNARGD FVGFRTSGRD ITERKKSEEK IRELAFYDTL
TRLPNRALLL DRLRESMAAS RENNVCGALM FIDLDHFKTL NDTLGHDKGD LLLRHVAYRL
SSSVSKGDTV ARVGGDEFVV VLGNLSLNKA AATAETEAAG EKILAVLGRA YELNGVQFRS
TASIGVTVFN GEQTSTDELF KQADLAMYKS KERGRNAMCF FDPAMQTTVL KRAELEVGLR
SAIEENRFVL HYQAQVVDGD HITGAEALVR WEHPVCGLIP PAEFIPLAEE TGLILEIGRM
VLESACAQLA LWATEPQMAH LSIAVNVSAR QFREPDFVES VLGVINRKGA RADRLKLELT
ESVLVENVED IIEKMGALRA RGVTFSLDDF GIGYSSLSYL KRLPLDQLKI DRSFVRDILE
DPNDADIART IVALARSFDL GVIAEGVETE AQRDFLAVAG CHAYQGFLFC KPLPVRSFEQ
FVASFECRDR MADRRRGRDE RSVDSDTMT