| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A2540 |
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| Symbol | |
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| ID | 4003451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | + |
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| Start bp | 2120816 |
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| End bp | 2123317 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637947097 |
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| Product | 3'-5' exoribonuclease, VacB and RNase II |
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| Protein accession | YP_558484 |
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| Protein GI | 91783278 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0548982 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.714199 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGAG AAAAAATCAT CGACAAGCCC TTGAGCAAAT TCCCGTATCC GATTCCAAGC
CGCGAAGAAA TCCTGGGCGT CCTGCGCACG AGTGAAGCGC CGCTTGCCGC GAACGACATC
GCCGAAGCCT TGTCGATCAA GCGCCAGGAG CGCGAAGGAT TTTTCAAGCG CTTAGGCGCG
ATGGAGCGCG ACGGCCAGAT CCGGCTCGAT CAGCGCAATC TCTATCAGTT GACTCATCCG
TCGAACTTCG TCGCCGGCCG CGTGCAAGGT CATCGCGACG GCTACGGTTT TCTGGTTCGC
GACGACGGTC AGGACGATCT GTTCCTGCCC ACCGGCGAGA TGCAGAAGGT CATGCACAAC
GACCGCGTGC TTGCGCGCAT CGTCGGCTAT GACCGGCGCG GCCGTCCGGA AGGGCATATC
GTCGAAGTCA CGGATCGCGC CAACAAGCGC GTGATCGGCC GCCTGCTCAA CGAGAACGGC
GCGCTGATCG TCGCGCCCGA AGACAAGCGC ATCGGCCACG ACATTCTGAT CACGCAGAAC
ACCAAGAAGG CCAAGGTCGG CCAGGTGGTG GTGGTCGAGC TGACCGATTT CCCGAGCCGT
CATTCGCAGC CGCTCGGCCG CGTGGTGGAA GTGCTCGGCG ATATCGACGA CCCCGGCATG
GAAATCGAAA TCGCGGTGCG CAAATACGGC GTGCCGCACG AATTCAGCCA GGCCGCGCTC
GACGAAGCCT CGCGGCTGCC CGACGAAGTG CGCCCGGTCG ACGCGCGTCA TCGCATCGAT
CTGCGCGACG TGCCGCTCGT CACGATCGAC GGCGAAGACG CCCGCGACTT CGACGACGCC
GTGTACTGCG AGCCGGTTCA GGTCGGCCGC GGCGAGGGCT TCCGCCTGAT CGTCGCGATC
GCGGACGTCT CGCACTACGT GCATCCGAAG AGCGGCCTCG ACGCCGACGC GATCGAACGC
AGCACCTCGG TGTATTTCCC GCGCCGCGTG ATTCCCATGC TGCCGGAGAA ACTGTCGAAC
GGTTTGTGCT CGCTGAATCC GAACGTCGAC CGTTGCGTGC TGGTGTGCGA CATGATCGTC
ACCACGCGCG GCGAGGTGAA GGCGTATCAG TTCTATCCCG GCGTGATGCA CTCGGCCGCA
CGGCTCACCT ATACGGAAGT CGCCGCGGTA TTGAAGAACA CCAAGGGCCC GGAGGCCGCG
CGCCGCGCCG CGTTGCTGCC GCAACTGCAG AATCTGTACG GCGTGTACAA GTCGCTGTTC
GCCGCGCGCC AGAAACGCGG TGCGATCGAC TTCGATACGA CCGAGACGTA TATCGTCTGC
AATGCGCAGG GCAAGATCGA ACAGATCATT CCGCGCACGC GGAACGACGC GCACAAGCTG
ATCGAGGAAT GCATGCTGGC CGCGAACGTC TGCGCGGCCG ACTTCCTCAA GCGCAACAAA
CATCCGGGGC TGTTCCGCGT GCACGCCGGG CCGACCGCGG AAAAGCTCGA GAATCTGCGC
ACCTTCCTGC GCGGCATGGG CCTCACGCTC AACGGCGGCG ACAAGCCGCA CGCGAGCGAC
TACGCCGCGC TGATGGCGCA AATCCGCGAG CGGCCCGACG CGCAGATGCT GCAAACCATG
CTGCTGCGCT CCATGCAGCA GGCGGTATAC AGCCCGGACA ACATCGGCCA CTTCGGTCTC
GCGTACGAGG CGTATGCGCA CTTCACGAGC CCGATTCGCC GTTATCCCGA TCTGCTCACG
CACCGCGCGA TCTACGCGAT CCTGCAAGGC CGCAAGTATC AGCCGGAGCC GCCGCAAGGC
GTCGAGCTGA ATACGGCGCT CTCGCCACGC GCTCGCGCCA TGCAGCAGGC CGACGACGAA
AAGCGCGGCC GCGTGCGTGG CAACAACGTG GCGATCTGGG AAGAACTCGG TCTGCATTGC
TCGGCCAACG AACGCCGCGC CGACGAAGCC TCGCGCGACG TCGAAGCCTG GTTGAAGTGC
TACTTCATGC GCGACAAGCT CGGCGAAGAG TACGGCGGCA TGGTGAACGG CGTCACGTCG
TTCGGCATTT TCGTGCAGCT CGATTCGCTG TTCATTGAAG GCCTCGTGCA CGTCACGGAA
CTCGGCTCGG ACTACTTCCA GTACGACGAG ATCAAGAACG AGTTGCGCGG CGAGCGCACC
GGCATCCGTT ATCGCCTGTC GGATCGCGTG CGGGTGCAGG TAAGCCGTGT CGATCTCGAC
GCGCGCAAGA TCGACTTCCG GCTCGTGCGC GACACGCCGA TCAAGCCGCC TTTGGTGCGT
GGGTCGGGGA CCGACAAGTC GTCCGCTGAA AATGGCGGTG CACGCGTGCG TGCGCTGCCG
CCGGTGGAAG GTGGAGCGGC AACGCAGGGC GCGCGTCGCA AGCGCGCCGC GCCCGCGCAA
ACCGAGGCGG TCAAGGAAGC ACGCGCGGCG CGCGGCGCGG CGAAGAAGCA CGGCGCCGCG
ACCAAATCGG CGTCGAAACC GCAGGCACGC AAGAAGCGCT GA
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| Protein sequence | MQREKIIDKP LSKFPYPIPS REEILGVLRT SEAPLAANDI AEALSIKRQE REGFFKRLGA
MERDGQIRLD QRNLYQLTHP SNFVAGRVQG HRDGYGFLVR DDGQDDLFLP TGEMQKVMHN
DRVLARIVGY DRRGRPEGHI VEVTDRANKR VIGRLLNENG ALIVAPEDKR IGHDILITQN
TKKAKVGQVV VVELTDFPSR HSQPLGRVVE VLGDIDDPGM EIEIAVRKYG VPHEFSQAAL
DEASRLPDEV RPVDARHRID LRDVPLVTID GEDARDFDDA VYCEPVQVGR GEGFRLIVAI
ADVSHYVHPK SGLDADAIER STSVYFPRRV IPMLPEKLSN GLCSLNPNVD RCVLVCDMIV
TTRGEVKAYQ FYPGVMHSAA RLTYTEVAAV LKNTKGPEAA RRAALLPQLQ NLYGVYKSLF
AARQKRGAID FDTTETYIVC NAQGKIEQII PRTRNDAHKL IEECMLAANV CAADFLKRNK
HPGLFRVHAG PTAEKLENLR TFLRGMGLTL NGGDKPHASD YAALMAQIRE RPDAQMLQTM
LLRSMQQAVY SPDNIGHFGL AYEAYAHFTS PIRRYPDLLT HRAIYAILQG RKYQPEPPQG
VELNTALSPR ARAMQQADDE KRGRVRGNNV AIWEELGLHC SANERRADEA SRDVEAWLKC
YFMRDKLGEE YGGMVNGVTS FGIFVQLDSL FIEGLVHVTE LGSDYFQYDE IKNELRGERT
GIRYRLSDRV RVQVSRVDLD ARKIDFRLVR DTPIKPPLVR GSGTDKSSAE NGGARVRALP
PVEGGAATQG ARRKRAAPAQ TEAVKEARAA RGAAKKHGAA TKSASKPQAR KKR
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