| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A2348 |
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| Symbol | rumA |
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| ID | 4003741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | + |
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| Start bp | 2311881 |
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| End bp | 2313299 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637947290 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_558674 |
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| Protein GI | 161621317 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.776247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0482024 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCCGAA CTGCCCCCCA TCGCCGCGCG CCGAAGCGCT ACAAGACGCC TCCGCCCGCG
CCGGCACACG TCGTCACCGG CAATGAGCCG GTCATCGAAA TCATTTCGCT CGATATGGAA
GCGCGCGGCG TCGGCCGCAC CGAGACCGAA GACGGCACAC CCGGCAAGGT GATCTTCGTC
GAAGGTGTGC TGCCCGGTGA ACGCGTGAGT TATTCGACGC ATCGCAGCAA GCCGAAATTC
GAGCAGGCCG AAGTGGTGCA GGTATTGCGC GAAAGCGTGA TGCGCACCAA GCCGAAGTGC
ACTTACTTCG ATATCTGCGG CGGCTGTTCG ATGCAGCATC TGGACATTCG CGCGCAGGTA
GCGGTCAAGC AGCGCGTGCT CGAAGACAAC CTCCAGCATC TGGCGAAGCT GCGCCCGGAA
ACGGTGTTCC GGCCGATTCA CGGGCCCTCC TGGGGTTATC GCTACCGCGC GCGTCTGGCC
GTGCGTTTCC TGCCGGAAAA GGGCGGTATG CGGATCGGCT TCCACGAGAA GAAGAGCAGC
TACATCGCCG ACATGAAGAC CTGCGAAGTG CTGCCGCCGC ATGTGTCGGC CATGCTGATG
CCGCTGCGCT TCATGGTCCG CAAGCTGTCG ATTTACGACC GTATGCCGCA GCTCGAACTG
GCGGTCGGAT CATCGGTGAC GGCGCTGGTG GTGCGTAATC TCGAACCCAT CACTGCGGCC
GACGAGCAGG TGCTGCGCGA TTTCGCCGAC GAGCACAAGG TGCAGTTCTG GCTGCAGCCG
GGCGGCCCGG ATACGGTCAC GCCGTTCTAT CCGCTCGACG TGCAGCTCGA CTACACGTTG
CCGGAGTACG GCATCCGCAT GCCGTTCAAA CCAACCGATT TCACCCAGGT GAATCACGCC
ATCAACCGCG TGCTGGTGAG CCGCGCGCTG CGGCTGCTGG CGCCGGCGCG TACCGATCGC
GTGCTCGATC TGTTCTGCGG GATCGGCAAC TTCACTTTGC CGCTCGCGCG AATCTCGAAA
GAAGTGATGG GTATCGAAGG CAGCGAGGTG CTGACTTCGC GTGCGCTCGC CAATGCCGGA
TTGAATGGCG TGGCGGGGCA TACGTCGTTT GAATGCCGCA ACCTGTTCGA AGTCACCGCC
GACGACCTGC GCGCGCTCGG CCACTTTGAC AAGTTCCTCA TCGACCCGCC GCGCGAAGGC
GCGCTGGCCG TCGCCAAGGC GCTCGCGGAA ATTGCCCGCA GCGGCAATGG CCCGCTGCCG
AAGCGCATCG TCTACGTGTC ATGCGCGCCG GCGACGCTCG CTCGCGACGC CGGTCTGCTC
GTGCATGAGG CCGGCTATCG CCTCGTGGGT GCGGGCGTGG TGAACATGTT CCCGCACACG
TCGCATGTGG AGTCGATCGC GTTGTTCGAG CGGGACTGA
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| Protein sequence | MSRTAPHRRA PKRYKTPPPA PAHVVTGNEP VIEIISLDME ARGVGRTETE DGTPGKVIFV
EGVLPGERVS YSTHRSKPKF EQAEVVQVLR ESVMRTKPKC TYFDICGGCS MQHLDIRAQV
AVKQRVLEDN LQHLAKLRPE TVFRPIHGPS WGYRYRARLA VRFLPEKGGM RIGFHEKKSS
YIADMKTCEV LPPHVSAMLM PLRFMVRKLS IYDRMPQLEL AVGSSVTALV VRNLEPITAA
DEQVLRDFAD EHKVQFWLQP GGPDTVTPFY PLDVQLDYTL PEYGIRMPFK PTDFTQVNHA
INRVLVSRAL RLLAPARTDR VLDLFCGIGN FTLPLARISK EVMGIEGSEV LTSRALANAG
LNGVAGHTSF ECRNLFEVTA DDLRALGHFD KFLIDPPREG ALAVAKALAE IARSGNGPLP
KRIVYVSCAP ATLARDAGLL VHEAGYRLVG AGVVNMFPHT SHVESIALFE RD
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