| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A2313 |
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| Symbol | |
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| ID | 4004969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | - |
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| Start bp | 2353972 |
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| End bp | 2357454 |
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| Gene Length | 3483 bp |
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| Protein Length | 1160 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637947325 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_558709 |
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| Protein GI | 91783503 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.141111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGACA TCGCCGCATC ATCGCAGTAC TCCCCGCCCG TCGCGCTCGT CAAGGCCGGC
CAGCGTTTCG CCTTCGACGG CACGCACGGC TCGTCCGACG CGCTGCTGAT CGCCCGCTAC
CATCTCGCCT ATCGCGAGAA GGTGCCGCTG CTCGCGGTCG TGTGCGAAAG CGCTGTCGAC
GCGCAACGTT TGGCCCAGGA GATCGGCTTC TTTGCGCCCG AGGCCCGCGT ACGGCTGTTG
CCCGACTGGG AAACGCTGCC TTACGATACC TTTTCACCGC ACCAGGATCT GGTCTCGGAG
CGGCTTGCCA CGCTGCACGA TCTCGGCGAA GGCCGTTGCG ACATCCTGCT GGTGCCCGCC
ACCACGGCGC TGTACCGCAT GCCGCCCGCC TCGTTTCTCG CGGCTTACAC GTTTTCCTTC
TCGCAGGGCG AGCGCCTCGA CGAAGCGAAA CTCAAGTCGC AACTCACGCT GGCCGGCTAT
GAGCACGTGA GCCAGGTGGT GCGTCCGGGC GAATACTGCG TGCGCGGCTC GCTGCTCGAT
CTCTATCCGA TGGGCTCGCC GTTGCCCTAC CGGATCGACC TGTTCGACGA CCAGGTGGAC
TCGATCCGCG CGTTCGACCC GGACACGCAG CGCAGCCTCT ATCCGGTGAA AGACGTGCGC
CTGCTGCCAG GCCGCGAATT CCCCTTCGAC GAAGCCGCGC GCACCGCATT CCGCAGCCGC
TGGCGCGAGA CTTTCGAGGG CGACCCGAGC CGCGCTTCGA TCTACAAGGA CATCGGCAAT
AGCGTGCCGT CCGCGGGCAT CGAATATTAT CTGCCGCTCT TCTTCGACGA CACGGCCACG
CTGTTCCATT ACCTGCCCGA AGGCGCGCAA CTGGCATTCG TGGGCGATCT CGACGCGGCG
ATCCGGCGAT TCACCAACGA CACGAAGCAG CGCTACAACT TCCTCTCGCA CGACCGCGAC
CGGCCGATTC TCGAGCCGCA GCGTCTGTTC CTGTCGGACG AAGATTTCTT CACGCTCGCC
AAGCCGTTCG CGCGGCTCGC TCTGCCGGCC AACGCGGGCG GCGGCTGGTC GACTCCATTG
CCGAACCTGG CAATCGACCG TCACGCGGAA GATCCGGTCG CGGCCTTGCG CGCCTATCTC
GACACCACGC CGAACCGCGT GCTGTTCGCC ACCGAATCCG CGGGCCGGCG CGAAACGCTG
TTGCAACTGC TCGCCGACAA TCATCTGAGA CCGGCATCGA GCGACAGTTT CCAGGACTGG
CTCCTTGGCG ACTCGCGTTT TTCGCTGGGC GTCGCGCCGC TCGCCAACGG TTTTGCCGTG
CCCGTGGACG GCATCGCGAT CATCACCGAA ACCGAGCTGT ATGGTCCGCT CGCGCGGCGC
GCGGGGCGCC GCCGCCAGGA ACAGGCGAGC AACGTCGATT CGATGGTGCG CGATCTGTCC
GAGCTGAAAC TCGGCGATCC GGTCGTGCAT TCGCAGCATG GCATCGGCCG CTATATGGGC
CTCGTCACGA TGGATCTCGG CGAAGGCGAG ACCGAGTTCC TGCATCTCGA ATATGCCGGC
GACAGCAAGC TCTATGTGCC GGTCGCGCAG TTGCACGTGA TCTCGCGCTA TAGCGGCGCC
GATCCGGAAA GCGCACCGCT GCACTCGCTC GGCTCGGGCC AGTGGGAAAA AGCCAAACGC
AAAGCCGCGC AACAGATTCG CGATACGGCG GCCGAGCTGC TGAATTTATA CGCGCGCCGC
GCCGCGCGTT CAGGCCACGC GTTCGCACTC GAACCGAAAG ACTACGTGAA GTTCGCGGAG
AGCTTCGGCT TCGAGGAAAC GCCGGACCAG GCCGCCGCGA TCGCGGCCGT GATCGGCGAC
ATGACGAGCG GCAAGCCAAT GGATCGCCTG GTATGCGGCG ACGTCGGCTT CGGCAAGACC
GAAGTCGCGT TGCGTGCGGC GTTCATCGCG GTGATGGGCG GCAAGCAGGT CGCGCTCCTC
TCGCCCACCA CGCTGCTCGC CGAACAGCAC ACGCAAACCT TCACCGACCG CTTCTCCGAC
TGGCCGGTGC GGATTGCCGA GCTGTCGCGC TTCAAGTCCA CCAAGGAAGT CAACGCCGCG
ATCCACCAGA TCAACGAAGG CACTGTCGAT ATCGTGATCG GCACGCATAA GCTGCTCTCG
TCGGACGTGC AGTTCAAGCG GCTCGGACTC GTGATCATCG ACGAGGAACA CCGTTTCGGC
GTGCGGCAGA AAGAAGCGCT GAAGGCCTTG CGCGCCGAAG TGGACGTGCT CACGCTCACC
GCCACGCCGA TTCCGCGTAC GCTCGGCATG GCGCTCGAAG GCCTGCGCGA TTTCTCCGTG
ATCGCCACCG CGCCGCAAAA GCGCCTCGCG ATCAAAACCT TCGTGCGGCG CGAGGAAGAC
AGCGTGATTC GCGAAGCCAT GCTGCGCGAG TTGAAACGCG GCGGCCAGGT CTACTTCCTG
CACAACGAAG TCGAAACGAT CGAGAATCGC CGGCAAATGC TCGAAGCGCT GGTGCCCGAA
GCGCGTATCG CAGTCGCGCA TGGGCAGATG CATGAGCGCG AACTCGAACG CGTGATGCGC
GACTTCGTGG CCCAGCGCGC CAACGTATTG CTGTGCACGA CCATTATCGA AACCGGTATC
GACGTGCCGA GCGCCAACAC CATCCTGATC CACCGCGCCG ACAAGTTCGG TCTCGCGCAG
TTGCATCAGT TGCGCGGACG TGTGGGCCGT TCGCATCACC AGGCCTATTC GTATCTGCTG
GTCCACGATC CGCAAGGGCT GACCAAGCAG GCACAACGCC GCCTCGAAGC GATCCAGCAG
ATGGAGGAAC TCGGCTCGGG CTTCTATCTG GCCATGCACG ACCTCGAAAT TCGCGGCACG
GGCGAAGTGC TCGGCGACAA GCAGTCAGGC GAAATTCACG AGATCGGCTT CCAGCTCTAT
ACCGACATGC TGAACGACGC CGTGAAGGCG CTCAAGGAAG GCAAGGAGCC GGACCTCACC
GCGCCGCTCG CCGCAACCAC CGAGATCAAT CTGCACGCGC CGGCGATTCT GCCCGCGGAC
TACTGCGGCG ACGTGCAGGA GCGTCTGTCG CTCTACAAGC GGCTGGCTAA TTGCGAACAC
AACGATTCGA TCGACAGCAT TCAGGAAGAG TTGATCGACC GCTTCGGCAA GCTGCCGCCG
CAGGCGCATG CACTGGTGGA GACGCATCGT CTGCGGCTCG CGGCGAAACC ATTGGGCATT
CTGAAGATCG ATGCCGGCGA AACCGTGATC GGCCTGCAAT TCATCCCCAA CCCGCCGATC
GACGCGATGC GGATCATCGA GATGGTGCAG AAACACAGGC ACATCCGGCT CGCGGGCCAG
GACAAGCTGC GTATCGAAAC GCGCAGCCCC GATCTCGCGG TGCGTGTCGC CACGGTGAAG
GAAACCTTGC GCGCGCTCGG CACGCCGAGC CGCGGTACGG CGGCCGGCGT GGCCGCGCGA
TGA
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| Protein sequence | MSDIAASSQY SPPVALVKAG QRFAFDGTHG SSDALLIARY HLAYREKVPL LAVVCESAVD
AQRLAQEIGF FAPEARVRLL PDWETLPYDT FSPHQDLVSE RLATLHDLGE GRCDILLVPA
TTALYRMPPA SFLAAYTFSF SQGERLDEAK LKSQLTLAGY EHVSQVVRPG EYCVRGSLLD
LYPMGSPLPY RIDLFDDQVD SIRAFDPDTQ RSLYPVKDVR LLPGREFPFD EAARTAFRSR
WRETFEGDPS RASIYKDIGN SVPSAGIEYY LPLFFDDTAT LFHYLPEGAQ LAFVGDLDAA
IRRFTNDTKQ RYNFLSHDRD RPILEPQRLF LSDEDFFTLA KPFARLALPA NAGGGWSTPL
PNLAIDRHAE DPVAALRAYL DTTPNRVLFA TESAGRRETL LQLLADNHLR PASSDSFQDW
LLGDSRFSLG VAPLANGFAV PVDGIAIITE TELYGPLARR AGRRRQEQAS NVDSMVRDLS
ELKLGDPVVH SQHGIGRYMG LVTMDLGEGE TEFLHLEYAG DSKLYVPVAQ LHVISRYSGA
DPESAPLHSL GSGQWEKAKR KAAQQIRDTA AELLNLYARR AARSGHAFAL EPKDYVKFAE
SFGFEETPDQ AAAIAAVIGD MTSGKPMDRL VCGDVGFGKT EVALRAAFIA VMGGKQVALL
SPTTLLAEQH TQTFTDRFSD WPVRIAELSR FKSTKEVNAA IHQINEGTVD IVIGTHKLLS
SDVQFKRLGL VIIDEEHRFG VRQKEALKAL RAEVDVLTLT ATPIPRTLGM ALEGLRDFSV
IATAPQKRLA IKTFVRREED SVIREAMLRE LKRGGQVYFL HNEVETIENR RQMLEALVPE
ARIAVAHGQM HERELERVMR DFVAQRANVL LCTTIIETGI DVPSANTILI HRADKFGLAQ
LHQLRGRVGR SHHQAYSYLL VHDPQGLTKQ AQRRLEAIQQ MEELGSGFYL AMHDLEIRGT
GEVLGDKQSG EIHEIGFQLY TDMLNDAVKA LKEGKEPDLT APLAATTEIN LHAPAILPAD
YCGDVQERLS LYKRLANCEH NDSIDSIQEE LIDRFGKLPP QAHALVETHR LRLAAKPLGI
LKIDAGETVI GLQFIPNPPI DAMRIIEMVQ KHRHIRLAGQ DKLRIETRSP DLAVRVATVK
ETLRALGTPS RGTAAGVAAR
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