| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A2196 |
|---|
| Symbol | |
|---|
| ID | 4005302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 2492332 |
|---|
| End bp | 2494209 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637947444 |
|---|
| Product | glycoside hydrolase family protein 15 |
|---|
| Protein accession | YP_558825 |
|---|
| Protein GI | 91783619 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.119453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00245917 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGACC ATCGACCTAT CCCGCCGAGA CCTGCCCTTG CGACCGACGC GCGCGGCCTG
ATCGGCAATA TGAAAACGAC GGCGCTGGTT TCGCTGCGCG GCTCGATCGA CTTCATGTGT
TTTCCGCGCA TCGACTCGCC GGCGATTTTC GCCGGCCTGC TCGAACCGTC GCGCGGCGGC
GCCTTTTCGA TCGCGCCCAC CTGCGAAGCC GCCAACGTCA AACAGATGTA TCTACCGGAC
ACCAATGTCC TGTTGACGCG TTTCATGACG CCCGAAGGCG TGTGCGAACT GATGGACTTC
ATGCCGGTGC CGAGAGATGA CGGCAAGCTC AGCGCCGATG CGCCGTTGCC GAATTGCGTG
ATCCGCGTCG CACGGATGGT GCATGGGCGC ATGGCGTTCA CGATGCGTTG CGAACCGCGC
TTCGACTACG CGGACGGCAC GCACACGGCG CATATCCTCG AAGACGGAGC GGTGGAATTT
CACGCCGAAA CTAACGCCGA CAGCGGCAGC GGAATGCAGT TGCGCCTGAA CAGCACCCTG
CCCCTCGCAC TCGACGGCAA CGCGGCGCAC GCCGGATTCG AACTCCAGCA TGGAGAGTCG
GCCGGTTTTG CTTTCGGCGA CGCCGCCGGC TTGCGCGACA AGTCATTCGA CTGCGAAGCG
GCGCTCGCCG ATACGATGCA GTACTGGCGA AGCTGGTCGG CGCAATCGAC CTATCGCGGC
CGCTACCGCG AAGTCGTGAT GCGCTCGGCG CTGACCTTGA AGCTGCTCAG TTCCAGCGAG
CACGGCGCGA TCGTGGCCGC GCCGACCTTC GGTCTGCCCG AAGCGCTCGA CGGTTCGCGC
CGCTGGGACT ATCGCTTCAC CTGGATTCGC GACGCCGCGT TCTCCGTGTA CGCGCTGCTG
CGTCTCGGCT ATACCGGCGA GGCGCGGCAT TTCATGAAGT GGATCGCCGA GCGCAGCCGT
CACTGCGACT CGGACGGCTC GCTGAACGTC ATGTACACCG TCGATGGCAG GAAGCCGCCC
GCGGAAACCG AAGTCGCGTC GCTGGCGAAC GGCGACGGCG ACGGCGCCGC GGGCGCGCCG
CTCGTCGGCA ACGCCGCGCG CGAACAGATC CAGCTCGACG TGTACGGCGC GCTGCTCGAC
GCAATCTATC TGTACAACAA GTACGGCGCC GCGATCTCTC ACGAAGGCTG GCGCGACGTC
ACGCGCACCG TCGATTACGT GGTCGAACAC TGGCGCGAAC CGGACCACGG CATCTGGGAG
TTTCGCAACG GCCTGCGGCC CCTGCTGCAC TCGCGGCTCA TGTGCTGGGT CACGGTGGAC
CGCGCGTTGC GTCTGGCGGA AAAGCGTTCG CTGCCCGCGC CGCTGAAACG CTGGTTCGAC
ACCCGCGACG CGATCCGCGC CGACATCCAC GAGCACTTCT GGAACGACGA ACTGGGCGCG
TTCGTGCAGA CGCCGGATTC GAAGCGGCTC GATGCGTCCG CACTGATGAT GCCGCTCGTG
CGCTTTATCG GCCCGACCGA TCCGCGCTGG CTCGGCACGC TCGACGCGAT TGGCGGCGAA
CTCAAGGTGG ACCCGCTGAT CTTCCGCTAC ACGCGAGGCT CGACGCTCGA CGGCCTGCCC
GGCATAGAAG GCGGTTTCAG CGCCTGTTCG TTCTGGTACG CGGAAGCGCT GGCGCGCGCC
GGCCGCGTGG ACGAAGGCCG GCTCGTGTTC GAGAAGATGC TCGCGTACGC CAATCACGTC
GGCCTGTTCT CCGAGGAAGT GGCAACCAGC GGCGAGGCGC TCGGCAATTT TCCGCAGGCT
TTGACGCACC TGGCGCTGAT CAGCGCCGCG TATCAGCTCG ATCGCAATCT CGACAAGGTG
CACATTCCGT GGACGTGA
|
|---|
| Protein sequence | MPDHRPIPPR PALATDARGL IGNMKTTALV SLRGSIDFMC FPRIDSPAIF AGLLEPSRGG
AFSIAPTCEA ANVKQMYLPD TNVLLTRFMT PEGVCELMDF MPVPRDDGKL SADAPLPNCV
IRVARMVHGR MAFTMRCEPR FDYADGTHTA HILEDGAVEF HAETNADSGS GMQLRLNSTL
PLALDGNAAH AGFELQHGES AGFAFGDAAG LRDKSFDCEA ALADTMQYWR SWSAQSTYRG
RYREVVMRSA LTLKLLSSSE HGAIVAAPTF GLPEALDGSR RWDYRFTWIR DAAFSVYALL
RLGYTGEARH FMKWIAERSR HCDSDGSLNV MYTVDGRKPP AETEVASLAN GDGDGAAGAP
LVGNAAREQI QLDVYGALLD AIYLYNKYGA AISHEGWRDV TRTVDYVVEH WREPDHGIWE
FRNGLRPLLH SRLMCWVTVD RALRLAEKRS LPAPLKRWFD TRDAIRADIH EHFWNDELGA
FVQTPDSKRL DASALMMPLV RFIGPTDPRW LGTLDAIGGE LKVDPLIFRY TRGSTLDGLP
GIEGGFSACS FWYAEALARA GRVDEGRLVF EKMLAYANHV GLFSEEVATS GEALGNFPQA
LTHLALISAA YQLDRNLDKV HIPWT
|
|---|
| |