| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A2085 |
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| Symbol | |
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| ID | 4004295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | + |
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| Start bp | 2623466 |
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| End bp | 2627563 |
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| Gene Length | 4098 bp |
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| Protein Length | 1365 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637947554 |
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| Product | putative membrane protein, SciS/IcmF-like |
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| Protein accession | YP_558935 |
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| Protein GI | 91783729 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.842355 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTTTTA CACACTCAGC AAGGGATCCA TTTTTTGCGG GCAAGCTCAA GTTGTCGTTT
CTGGTATCGC GCCAGTTCCT CGCACTCGTC GCGCTGCTCG TCGTCGCGCT GGTGATCTGG
TTTGTCGGTC CCCTCGTGGC GTTCGGCGGC ATGAAGCCGC TCGCCACCGT CGGCATGCGC
GTGCTGGTGA TCGCGCTCAT GCTGGCCGGC GTGCTGCTAT GGCTGGCCGG CTGGTCCCCC
AGTGTGTTCT TCGTGGCGCT ACTGTGTCTG CTGATCTGGC AGGCCTCGCC GCTTCTCGCG
TTCGGCCGTG AACAGCCGTT CATGCCCGCC TCGGCGCGCG TTATCGCGAT TGCACTCGTA
CTGGCGATAT TCGTCGTGTA CTGGGCATTC CGGCTCTGGC AAAAAATGCG TAGCGACGCG
CAGTTCCTCA AGAGCCTGCT CGAATTCGGC GGCAGGAAAG AGGCCTCGCC CGCGGCGGAG
CAACTGGCGA ACGTGCAGGC GATCGTATCC GGCGCGCTGG CGCGCCTGAA GGCAATGCGC
ACCGGAGCGC GCGGAATCGG GCGGCTGTTT CAGGGCAAAC GCTACCTGTA CGAACTGCCG
TGGTACATCA CGCTCGGTTC GCGGGGCTCC GGCAAGACGA CCGCCTTGCT CAATGCGGGA
TTGTCGTTTC CCGTCGCGGC GCAGATGCAG CGCACCATCG GCGCGCTTGC CGGCACCGAG
TCAGTCGACT GGTGGCTGAC CAACGACGCA GTGCTGATCG ATACCGCGGG TCACTATACG
CGGCACGGCA CCTCGCAGCG TGAACGCCTG TCGTCGACGC TCGCTGCCGC GGCCGCAAAG
TCTGCTGACA AGGCGAAGGC TGCGTCGAAG AATGAAAACG CGAGCGACAA GGGCAAAACA
GCCGTGGCGT TCTCCGCGCA AGCCGGCGCG GCGGCAGGCT CCAGCCCGGG CAATCCGGAT
GCGGCCCGGT TGCACGAGAA AACCGATGCG GACGAATGGT TCGGCTTTCT GGCGCTGCTG
CGCAAGCACC GGCCGCGCGC GCCGATCAAC GGCGCAATAC TGACCCTGGA ACTTGCCACG
CTGACGGGGC TGGACGAGAA CGCGCGCATG GCCGAAGCCG CCGCGTTGCG CGGCCGTCTC
GCGGAGCTGC GCGAAACGCT AGGCATCCGC TTTCCGGTTT ATCTGGTCAT CACCAAAATG
GACCGGCTGA GCGGCTTCAA TGAATACTTC GCTTCATTGC CGGCCGAGGG GCGTGCCCAG
TCCTGGGGCT TTACCCTGCC CTACGGCAAG GAAACCATTG CGGCCCAGGG CGTGCGCACT
CGCTGCGAAG AGGAACTCGG CCTATTGGCA ACCCGTCTGG CCGACGGCGT CAACACGCGT
TTGCAGGACG AATTCGATTC GACCCGACGC CGGCAGCTTG TCGCGCTATC CGAAGAGTTT
GCCGCGCTGT CGCAGCCGCT CGGCGAGTTG ATCGAACGCG TGTTCCTCGA CTCGCGTTAC
GACGACACGC AGCTTCACGC CACCCTGCGC GGCGTCTATT TCACGAGCGC GCTTCAAGCC
GGCGACACGC TGGTCGCCGA GCGGCGGACA ATCGCACAGC GGCTGGCGGC GTCGTTCGAT
CGGGTGGCGG GCGCGCGCGC GTCCAGACCG GGCGGCAATC AGAGCTACTT CCTGCACGAC
CTGCTCACCA GAGTGGTATT CGCCGAGTCG CAGCTCGTGC GGCCCAACCT GCGCTGGGAA
TTCCGTTTCC GTCTGCTGCG GCTCATCGGC CATGCGCTCG CCGTGCTTCT GTTCGCGTGG
CTCGCAATCG GGCTGCGGTT CAGTTTCGGC CACAACAGCG ACTATCTTTC GCTGATCAGC
CGCAAGACCC AGGCGCTGAG CGCAAAGGTC GCGCAACTGT ACAAGGAGCC GAAAGCCGAA
GCGATCCCCG ATACGCTCAC CGAGGCGCGC TACCTGCCGG CCTTTCCGGG GCTCGACCTG
GCGGACCCGG ACAGCGCGTA TCGTTTCGGC CTTTATACGG CACCTGAGAT TGTCACCGAA
AGCAGCCGCA CTTACGACAT GCTCGAAGAC AATCTTCTGC TGCCGCAGAT CGTGCGGCGT
GTCGAGGACG TCATCGCGCA GGCGGTGGCA AACAGGGATT CGAAGGCGGC CTACGACGCG
CTGCGTGTCT ACCTGATGCT GTACGACAAG GCCAGATTCA ACGCCGACGA CGTGAAAGCC
TGGGTGCTCA ACGACTGGGC GAACACGGAC AGCGCGGCGG CTTTCGGCGG CCGGGCCTCG
ATGATCGGGC ACGTTCAGCA GCTCTTTTCA GGCAGCCGCG TGGTTCAGTC ACCGTTGATC
CGCAACGATT CGCTGGTGCA GCAGGCACGT TCGTTCCTGG ATGGCAGCAA CGCCACCGAG
CGTCTGTATG AACGCGCGAG GACGGCAATG CAAAAGGAAG CGCCCGACGA ATTCACGCTG
ATCCGCGCGG TCGGACCGCA AGCCGGACTC GTCTTCACGC GGGCGAGCGG CGCGCCGCTG
TCGCGCGGCG TGCCGGGACT CTTCACCTTC GACGGATACC GCCAACTGTT CGACAAGCGC
CTGCCCGAGT TCGTCGCGGC CGCGCGCGAC GACGACGCCT GGGTGATGGG CCGCTCCTAT
CTCGGCGAGG CTCAAAAAAA AACGGCTGAA TTCGTCAGCG CCGCGACCGG TGCCGACGAC
CCTTTGACCG ACGCGATCCG CCGGCAATAC CTGACGGAAT ACGCGCGACA GTGGGACGCG
TTTCTGGGCG ACATCCGCAC GGTCAGCGGC ACCAGTCTGC AGTTCAACCT CCAGGTGCTG
CGCAGTTTCG CGGCGCCGGA TTCACCGCTG GCACGGCTCG CTCGCGCGGC GGTGCGCGAG
ACCACGCTGA CGCAACCCGC CACGGCGGCA GACGGCTCCC TCCTGCAGAA GACGACTGAC
CAACTCAGCC AGCAGGCGGA CAGGACGCTC GGGATCCGGG CTTCGGAAAT CGTCGAACGC
GAGCTGGTGG ATAGTCACTT CGCCGCGCTG CGCGAGGTGG TCACGGGCAA CGCGGACGCC
CAGACCGCCC AGGCTGCCAC TGCGCAGGCC GGCAAGACCG GTCTGGACGG CGTGACGAAT
CTGCTGAACG ACTACTATAC GTCGCTGACG GTTGCCGACA ACGCGCTCGC CAACAACAGC
ATGCCGCCGG CGAGCGACAC CGCGGCGAAG CTCAAGATGA CCGCCAACAC CATGCCGCCG
CCGTTTCGCG CCGTGTTGCT GGCGCTCGCC GGCGACGGCT CGCGCGAGGT GAATCAGGGC
ATCGGCCAAT TGCTGTCGCG GCAGATGCAG GCGGTGGTCG GCGACACCTG CCGTCTCACG
ATCGAAGGCA ACTATCCGTT CGCCGCCGAC AGCAGGCGCG AGGTCCGTAT CGACGACTTC
ACGCGCGTGT TCGCGCATGG CGGCATCATC GACGACTTCT TCACGAAGAC GCTCGCGACA
TTCGTGGATA CCTCGGCGAA ACCCTGGCGC TACAGGACGC TGCCCGGCGC CACCGAGCCT
GTCCAGGGAC CGGACCTCGA ACCCTTCCAG CACGCCAGGG CGATTCGCGA GATCTTCTTT
GCCGATGCGG ACCAGAAACA GTTGTCCTGG AAGGCCGATA TCCGGGTTCC GGAGCTCGAT
CCGACCATCA GCGCCCTGAT GATCGATATC GACGGCCAGA CGCTGCTCTA TCAGCATGGG
CCGGTTACGC CGTTCCCGGT GACGTGGCCG GGCACACGCG GCGGGGTGCG CGCGGAGCTG
ACGGCCGAAC CGCGCATCCG GCCGGAGACT TCGACGCTTG CGGCGGACGG TCCGTGGGCG
CTGATGCGGC TGGTTCAGAA AGGACAGATC GTCGAGACCA CGATACCCGG CCGCACGCGG
GTTGCATTCG ACTTCGACGG CCGCAAGGCC GTGCTCGATA TCGCGGCGGT GGGCAGCGTC
GCCAATCCGC TGACGAGCGA TGTGCTGAAG ACCTTCAGAT GCCCGAGTTC GATGCCGACG
CTCACCCTCA CCGACAGCGG GCCGCCGCCG GGCCTGCCGC AGGCGGCGCC ACCCGCGGCC
CCGGATGCGC GCGATTGA
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| Protein sequence | MSFTHSARDP FFAGKLKLSF LVSRQFLALV ALLVVALVIW FVGPLVAFGG MKPLATVGMR
VLVIALMLAG VLLWLAGWSP SVFFVALLCL LIWQASPLLA FGREQPFMPA SARVIAIALV
LAIFVVYWAF RLWQKMRSDA QFLKSLLEFG GRKEASPAAE QLANVQAIVS GALARLKAMR
TGARGIGRLF QGKRYLYELP WYITLGSRGS GKTTALLNAG LSFPVAAQMQ RTIGALAGTE
SVDWWLTNDA VLIDTAGHYT RHGTSQRERL SSTLAAAAAK SADKAKAASK NENASDKGKT
AVAFSAQAGA AAGSSPGNPD AARLHEKTDA DEWFGFLALL RKHRPRAPIN GAILTLELAT
LTGLDENARM AEAAALRGRL AELRETLGIR FPVYLVITKM DRLSGFNEYF ASLPAEGRAQ
SWGFTLPYGK ETIAAQGVRT RCEEELGLLA TRLADGVNTR LQDEFDSTRR RQLVALSEEF
AALSQPLGEL IERVFLDSRY DDTQLHATLR GVYFTSALQA GDTLVAERRT IAQRLAASFD
RVAGARASRP GGNQSYFLHD LLTRVVFAES QLVRPNLRWE FRFRLLRLIG HALAVLLFAW
LAIGLRFSFG HNSDYLSLIS RKTQALSAKV AQLYKEPKAE AIPDTLTEAR YLPAFPGLDL
ADPDSAYRFG LYTAPEIVTE SSRTYDMLED NLLLPQIVRR VEDVIAQAVA NRDSKAAYDA
LRVYLMLYDK ARFNADDVKA WVLNDWANTD SAAAFGGRAS MIGHVQQLFS GSRVVQSPLI
RNDSLVQQAR SFLDGSNATE RLYERARTAM QKEAPDEFTL IRAVGPQAGL VFTRASGAPL
SRGVPGLFTF DGYRQLFDKR LPEFVAAARD DDAWVMGRSY LGEAQKKTAE FVSAATGADD
PLTDAIRRQY LTEYARQWDA FLGDIRTVSG TSLQFNLQVL RSFAAPDSPL ARLARAAVRE
TTLTQPATAA DGSLLQKTTD QLSQQADRTL GIRASEIVER ELVDSHFAAL REVVTGNADA
QTAQAATAQA GKTGLDGVTN LLNDYYTSLT VADNALANNS MPPASDTAAK LKMTANTMPP
PFRAVLLALA GDGSREVNQG IGQLLSRQMQ AVVGDTCRLT IEGNYPFAAD SRREVRIDDF
TRVFAHGGII DDFFTKTLAT FVDTSAKPWR YRTLPGATEP VQGPDLEPFQ HARAIREIFF
ADADQKQLSW KADIRVPELD PTISALMIDI DGQTLLYQHG PVTPFPVTWP GTRGGVRAEL
TAEPRIRPET STLAADGPWA LMRLVQKGQI VETTIPGRTR VAFDFDGRKA VLDIAAVGSV
ANPLTSDVLK TFRCPSSMPT LTLTDSGPPP GLPQAAPPAA PDARD
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