| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A1963 |
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| Symbol | |
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| ID | 4002933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | - |
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| Start bp | 2759137 |
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| End bp | 2761482 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637947673 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_559054 |
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| Protein GI | 91783848 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0257216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00891251 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAAAGAC ACAGACTGTA TGGAGATGCG TCCGGATTTT CGGGCCGCCT AATGGCTGCG
TTCATGTTGC TGATACTTGC GTTCAGCGCA AATGCAGACG ACTGCTTCTC ACTGTACGCG
AAGTCCGGCG CCACGCCGGG CTCCAAGACC TGCAAGCTCG ACGTTACGAG CAACACGCCG
GGTGGTATGG GCAACTACGC GTGTATTAAT GACCTCGTGC AGATTGATCA GTGGTGTAAT
TCAACCGGCA CTCCGCCGGA CGATACCTGC CCGGTGGCTG ACCCGGTGTT TCCCGCGAAC
GGGATTGTGA CTCTCTCTGA AACTGATTTT GCAAGCGGCG ACACGTCGCC GCTTGTGTTC
AGTCGTAGCT ACCTGTCCAA GCCGTTCGAT AAAGTGCAGA CAGCGATGGG CGGGTACTGG
GCAAGTAACT GGCAGCGACG GCTTGATCTG ACCTCGGTCA ATGCAAGTAC GCCGAAAATC
ACCGCGTATC GGAGTAACGG CCAGCCTCTG ATCTTCAAGT GGGTTAACGG CGGGTGGGCG
GTGCCGGGTA CGTCGGGTCT TTCTCTCTTG AAAGCTGGCG ACGGATACTT CTACCTGAAG
GACGAACGGC TTGGCACGAC CGAAACATAC TCCGTCAGCA CAGGTCTGTT TCACTCCGAG
ACAACACGCA CGGGTATGTA TCGTGAAGTT GAATACGTTG GACAACAGAT AGATTCGATC
GCGCAGTGGC CCGTTGATCG GATCGGGCAG ACGGCATCGC GGCTGACACT TAGTCTGACA
TATGACAGTA ATGGTCGCGT TGTGAGTGTA GTGCCGCCTT CGGGCAACGC GACACATTAT
GCGTACGATG CGAAAGGCAA TCTTGTTTCA GTAACCGCGC CGATTGGATA CGTTCGTCAG
TACCTTTATG AGGATGCCCG CTTCCCCAAT GCGATGACCG GGATAAAGGA CGAATCCGGT
TCACGGATTG CAACATGGAC CTACGATTCC AGCGGACGCG CAATCTCAGT CACCCATCCG
GACACGACGC GTAACGTTTC TTTCAGTTAT GGCGCGAACA CGACCACTGT TAGCAATATG
TCCGGCAACA GCACGTATTC TTTTAATGTT GGAGACACGT CGCGTCCTGG CTCAATTGTT
ACGCCTGGCG GCGCGGTCTC ACGTACATGG GATACATCAG GGAACCTGAA GCAGACAATT
ACACCGGATG GGAATACACA GTACACGTGG GACGGCGCCA ACCGGCCGAC GAAAGCAGTT
GCGACAGTCT CTGGCAACAG GACGGTAACG ACGATCGAGT ATAGCGACAG TACCTCGTTG
CGTCCGCATC TGGTCGCCAC GCCGGGTAAA ATCCGCGCGT TTGTCTATGA CCAGGGCGGT
AACGTCACTG GCTACGCCGA GACGGAGACG ACCGATCTGA CGGGCGAACA GGGGATGCAA
GCCGTTGGGA CCGGTAACCA GTGGACAGTT GGTGCAAGCT ACGATTCGGC GAGCCGCCTT
CTGTCGGCTG TCATCACACG TAATGGCTCG AAGCGTGAAG ACTGGACCTA CACATACGAT
GTACGGGGCA ATGTCGAGTC AGTGCAGGAT GCCGTATCTG GCTGGTCGAT GCGAACGCTC
TCGCGCAATG CTGAGAATCG TGCAACGCAG ATAGCTGGAA ACAGCGGTCA GGCGAGCATC
GGGTACGATG AGCGCGGTCG CGTAAAGTCC TTTCAGTATA GCGAACCGGC AAGTTCGTTA
AATGGTGGAC TTGCCCGTGT ACTGGCAGTC GATTACCGGT ATGGTCCAGA CGGTACGGTG
TCCTCGTACA CTGCTCAGGT GTCGACGAAC GGCGCCTGGT GGCAGCCGAT CAGCGATGCC
GAACTGGGAG TGTGGCTCAC CAACTGGGAA CTGGGAAATG ATCCGGTTGC ACCCCCGGCG
AGCCTCACCG GCCTGCAATC CAATGGCAGA GCCTTCGTTC CAGAAATCTG CGTTGAATGC
TACATGGCCT GGAAGGCGTT GCCGACAGGT AAGCTATTCG GCCAGGAATT GGGCGAAACA
CTGCCGGCAT GGCGCGAAAC CACCGAGTTG ATGCTGAGCG ATCAGGCGCA GGTTCCATAT
CCTTCGCTCG TGCCCGATCT GACGAGTTCT GCGAAGCGGT CAACGCTTTA CAGCAGCCTG
TTCAAGGGGG GGGATGGTGG ATTCGCTAAA TGCGGCGGTA GAGAAGCTCA CGAGGCCGAA
TGCTATGCTC AGTATGAAAA CGACAGAGAC GAATGCCGTC TCCTGGCCGG ACCAAGAGGG
AAGCGAAACT GGGCCCTATG CTTGGCGAAC GCTTTTGACA GATATCAACA ATGCAGGGGG
TATTGA
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| Protein sequence | MKRHRLYGDA SGFSGRLMAA FMLLILAFSA NADDCFSLYA KSGATPGSKT CKLDVTSNTP
GGMGNYACIN DLVQIDQWCN STGTPPDDTC PVADPVFPAN GIVTLSETDF ASGDTSPLVF
SRSYLSKPFD KVQTAMGGYW ASNWQRRLDL TSVNASTPKI TAYRSNGQPL IFKWVNGGWA
VPGTSGLSLL KAGDGYFYLK DERLGTTETY SVSTGLFHSE TTRTGMYREV EYVGQQIDSI
AQWPVDRIGQ TASRLTLSLT YDSNGRVVSV VPPSGNATHY AYDAKGNLVS VTAPIGYVRQ
YLYEDARFPN AMTGIKDESG SRIATWTYDS SGRAISVTHP DTTRNVSFSY GANTTTVSNM
SGNSTYSFNV GDTSRPGSIV TPGGAVSRTW DTSGNLKQTI TPDGNTQYTW DGANRPTKAV
ATVSGNRTVT TIEYSDSTSL RPHLVATPGK IRAFVYDQGG NVTGYAETET TDLTGEQGMQ
AVGTGNQWTV GASYDSASRL LSAVITRNGS KREDWTYTYD VRGNVESVQD AVSGWSMRTL
SRNAENRATQ IAGNSGQASI GYDERGRVKS FQYSEPASSL NGGLARVLAV DYRYGPDGTV
SSYTAQVSTN GAWWQPISDA ELGVWLTNWE LGNDPVAPPA SLTGLQSNGR AFVPEICVEC
YMAWKALPTG KLFGQELGET LPAWRETTEL MLSDQAQVPY PSLVPDLTSS AKRSTLYSSL
FKGGDGGFAK CGGREAHEAE CYAQYENDRD ECRLLAGPRG KRNWALCLAN AFDRYQQCRG
Y
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