| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A1953 |
|---|
| Symbol | |
|---|
| ID | 4002812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 2775142 |
|---|
| End bp | 2775960 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637947683 |
|---|
| Product | ABC polyamine transporter, inner membrane subunit |
|---|
| Protein accession | YP_559064 |
|---|
| Protein GI | 91783858 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0210631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.881072 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGA ACCGGATTTT GCAGTTCATT GCCCTCGGAA TCGGGTTTGT GTTTCTGTAC
GTGCCGATCG TGAGTCTGAT TGTGTATTCG TTCAACGAAT CGCAACTGGT CACGGTGTGG
ACGCGTTTTT CGACACGCTG GTATGCGGCG TTGCTACAGG ATGACGAACT GATCGCGGCG
GCGTGGTTGT CGTTGCGAGT GGCGTTGTTG ACGGCGTTTG CGTCGGTGAT CATCGGCACG
TGGGCCGGGT TCGTGCTCGC GCGCATGGGA CGGTTTCGCG GCTTCACGTT GTATACGGGG
ATGATCAACG CGCCGTTGGT GATTCCCGAG GTGATTCAGG GCATTTCGCT GCTGCTCCTG
TTCATCGAAA TGGCCAAGTG GTTGGGATGG CCGGCCGGAC GCGGCATTTT CACGATCTGG
ATCGGGCACG TGATGCTGTG CATCTCTTAT GTGGCGATCA TTGTGCAGTC GAGGGTGAAG
GAACTGCATC CTTCGCTCGA AGAGGCGGCG CTGGATCTTG GGGCTACGCC GTTGCGGGTG
TTTTTCTTCA TCACGTTGCC GCTGATTTCG CAGGCGCTTG TGTCGGGCTG GTTGTTGTCG
TTTACGTTGT CGATCGACGA TCTGGTGCTG TCGGCGTTTT TGTCCGGGCC CGGTTCGACC
ACGCTGCCGC TGGTCGTTTT CTCGCGCGTT CGTCTGGGGC TGAATCCGGA GATGAACGCT
TTGGCCACGC TGTTTATCGC GGTGGTCACG GTTGGGGTCG TGGTCGCCAA CTACTTCATG
CAGCGGGCGG AGAGAAAACG GGCCGTGATG GCGGTTTAG
|
|---|
| Protein sequence | MKPNRILQFI ALGIGFVFLY VPIVSLIVYS FNESQLVTVW TRFSTRWYAA LLQDDELIAA
AWLSLRVALL TAFASVIIGT WAGFVLARMG RFRGFTLYTG MINAPLVIPE VIQGISLLLL
FIEMAKWLGW PAGRGIFTIW IGHVMLCISY VAIIVQSRVK ELHPSLEEAA LDLGATPLRV
FFFITLPLIS QALVSGWLLS FTLSIDDLVL SAFLSGPGST TLPLVVFSRV RLGLNPEMNA
LATLFIAVVT VGVVVANYFM QRAERKRAVM AV
|
|---|
| |