| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5451 |
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| Symbol | |
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| ID | 4016410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007950 |
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| Strand | - |
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| Start bp | 203078 |
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| End bp | 204748 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637945071 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_552203 |
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| Protein GI | 91791253 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0297811 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.024841 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTG CACTGTCGAT CATGTCCGTT GCAGCAGCAG CTCTCACAGC TGGTTGCGTC
ACCACCCCAG GTTCAAATGA AACCATCCGG CCAAAGGTGG AGGTTTCGAG GGAGCGCGCC
GAGAAGCTGC TGGCATCGCG CCCGGTGGCT GAATCTGGCC CGGTTTCCTT TAGCGAACAG
AGCTGGATAC CACTCCGAAA GGTCGAGCGC TCGGAGCGCG ACAAGGCAAA TGCAAAAACT
GACGCGATTC AGGTCGAAAT CAACCAACGG TTCAACAGCC TGAACGACGT TGCTGGCTTG
GTCGCGTCAA TGACGGGGCT GCCTGTCGCG GTAGATCCCG ATGTGTCGAC CCGCCCTCAA
CAGGCCGGCA CAACCCCTGC AGCCGTTGCT CCCTTGCCAA TGGGGGGGGC GGCCGGAGGG
CCACTACCGT TTCCCATGGG CGCTGCCCAA GGCTACTCGC CTAGCGGCAC CCCGTCCGGC
CCAGTTTCTG CCGCCTCACC GCTGGCAACC AACTATTCCG GCAATCTGGC GGGTTTCATG
AATTTCGTGT CCGCCTACTA TGGGATCAGT TGGCGCGTCG AAGGCAATGG ACTGCGCTTC
TTCCTGATGG AGTCTCGGAC CTTCCGAATT GCGGCACTCC CTGGCGATAC TCGCCTGAGC
AGTGCTGTCG AGTCGACGTC GTCCTCCGGC GGCAGTTCCT CTGCGTCGGG TGGTGCAGGC
TTGGCTGGAC CCACGCAGAG CGGCAGCTCG ACCAATTCGA CTGGTGTTGG CTTCGCTGGA
TTATCTGTTT GGACTGCCCT TGAAAGTGGC ATCAAGCAGA TGCTCAGCAA CGCTGGAAAG
GTAAGCGCGT CCCCCGCAAC CGGCACGATC ACGGTGACAG ACACGCCGGC GGTGATGGAG
AAAGTAGCCG ATTTCGTGAC CGCTCAGAAT CAAGCATTGA ACCGGCTTGT TTCTGTCAAT
GTTCGTGTCC TTTCTGTCGA GATATCAGAA GGCGACGACT ATGGCATCAA CTGGGATGCG
GTCTACGCAA ACCTCTCAGC TGCAAACCCC TATTCGCTGG CTCTGAAGAC AGCCTTCCCA
ACGGCGACCG GCGCTGGAAA TCTCATCATC TCCGCGCCCG CTGGTTCGAA CAGCCGCTGG
GCGGGCTCGT CAGCCATGCT GTCGGCACTC TCGATGCAAG GTCGTGTCAG TGAGTTGACC
TCTGCAACGC TGGTGACACT GAATAACCAA CCGGCTCCCG TAAACGTTGG GCGCAAGGTG
TCGTATTTAG CCTCAAGTTC GCAGACACAG ACGGCCAACG TCGGGTCAAC GGTCTCTCTC
ACGCCAGGCG TTATACAGAC GGGCTTCTCG ATGACGATTG TTCCTCACAT CATCGATGGC
AACGAATTGC TGCTGCAGTA CTCGCTTGAC CTTTCCTCCC TGCTCAAGTT GAACACGATT
TCGTCTGGGA CCAGTTCCAT CCAGGCTCCT GATGTAGCAA CAAGCAACTT TATCCAGAGG
GTGCGCTTGA AAAGCGGTGA AACCCTTGTT GTCGCCGGCT TTGATCAGGA CAACCTGACG
GCCGTCGCCA ACGGTGTTGG TGCCGCGGAG AACAAGCTGC TGGGCAGCCG AACCGGTTCA
ACAAAAAGAC AAATCCTCGT GGTGTTGATC CAGCCAAATA TCGCTCATTA A
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| Protein sequence | MKFALSIMSV AAAALTAGCV TTPGSNETIR PKVEVSRERA EKLLASRPVA ESGPVSFSEQ
SWIPLRKVER SERDKANAKT DAIQVEINQR FNSLNDVAGL VASMTGLPVA VDPDVSTRPQ
QAGTTPAAVA PLPMGGAAGG PLPFPMGAAQ GYSPSGTPSG PVSAASPLAT NYSGNLAGFM
NFVSAYYGIS WRVEGNGLRF FLMESRTFRI AALPGDTRLS SAVESTSSSG GSSSASGGAG
LAGPTQSGSS TNSTGVGFAG LSVWTALESG IKQMLSNAGK VSASPATGTI TVTDTPAVME
KVADFVTAQN QALNRLVSVN VRVLSVEISE GDDYGINWDA VYANLSAANP YSLALKTAFP
TATGAGNLII SAPAGSNSRW AGSSAMLSAL SMQGRVSELT SATLVTLNNQ PAPVNVGRKV
SYLASSSQTQ TANVGSTVSL TPGVIQTGFS MTIVPHIIDG NELLLQYSLD LSSLLKLNTI
SSGTSSIQAP DVATSNFIQR VRLKSGETLV VAGFDQDNLT AVANGVGAAE NKLLGSRTGS
TKRQILVVLI QPNIAH
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