| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5281 |
|---|
| Symbol | |
|---|
| ID | 4016240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007950 |
|---|
| Strand | + |
|---|
| Start bp | 33827 |
|---|
| End bp | 34747 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637944906 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_552038 |
|---|
| Protein GI | 91791088 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAG GCATCATGCT GCAAGACAAA GTAGCCGTAG TCACTGGCGC GGGCCGGGGT
ATCGGCCGCG ACATCGCGCT GATGATGGCG GCGCAAGGCG CCAAGGTGGT GGTCAACGAC
ATCGGCGCCT CGGTGGGCGG CGAAGGCAAT GACGCCAGCC ACGGCCAGCA AGTCGTCAAC
GAGATCAAGG CCACCGGCGG CCAGGCCGTG CTCAGCACCG ACAGCGTGTC GACCTGGCCC
ACGGCCAATC GCATCATCGA GTGTGCCGTT GACACTTTCG GACAAATTGA TGTCGTAGTC
AACAACGCCG GCATCCTGCG CGACCGGCTG TTCTTCAACA TGTCGCCCGA GGAGTGGAGC
GCCGTCATCG ACGTGCACCT GAACGGCAGC TTCTTCACCT CGCGCGCGGC CGCGCCGCAC
TTCAAAACGC AAAAATCAGG CGCTTATGTG CACATGACCT CGACATCGGG TCTGATCGGC
AACCTGGGCC AGGCCAACTA TGCTGCTGCC AAGCTGGGCG TCGTGGCCAT GTCACGCCAC
ATCGCTGGTG ACATGCAGCG CTACAACGTG CGCTCCAACT GCATCTCGCC CTTTGCCTGG
AGCCGCATGA TCGGCGCGAT CCCGACCGAC ACACCCGAGC AGCAGGCGCG CGTGGAAAAG
CTGAAAAAAC TCGGCACCGA GCAGATTGCG CCCATGGCCA CTTTCCTGGC CAGCGATGCC
GCGGCCGATG TCACGGCCCA GATCTTTGCC GTGCGCGGCA ACGAGATCTT CCTCATGAGC
CAATCGCGCC CGATCCGCGG CATGCACACT TCCGAGGGCT GGACGCCCGA GACCATCGCC
GAGCGCGTGC TGCCCGCGAT GAAGCAGAAC TTCTATCCGC TGGAGAGCTC GAACATCGTG
TTCTCCTGGG ACCCGGTCTA A
|
|---|
| Protein sequence | MNKGIMLQDK VAVVTGAGRG IGRDIALMMA AQGAKVVVND IGASVGGEGN DASHGQQVVN
EIKATGGQAV LSTDSVSTWP TANRIIECAV DTFGQIDVVV NNAGILRDRL FFNMSPEEWS
AVIDVHLNGS FFTSRAAAPH FKTQKSGAYV HMTSTSGLIG NLGQANYAAA KLGVVAMSRH
IAGDMQRYNV RSNCISPFAW SRMIGAIPTD TPEQQARVEK LKKLGTEQIA PMATFLASDA
AADVTAQIFA VRGNEIFLMS QSRPIRGMHT SEGWTPETIA ERVLPAMKQN FYPLESSNIV
FSWDPV
|
|---|
| |