| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5240 |
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| Symbol | |
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| ID | 4015967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007949 |
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| Strand | + |
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| Start bp | 349309 |
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| End bp | 351009 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637944867 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_551999 |
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| Protein GI | 91791048 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.67535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCATGA AATACACCCC AATTACTCTG GCTGTGGCCG CTTCGTTGTT GGCCGGCTGC
GCCACAGGGC CAGCTGACAA CGCCGCCATC AAAATCAAAG TTGAGGCAAC AAGAGCCGAA
GCACAGCGGC TCATTTCCTC TCGCGAGACA CCGGTGGAAG CAAGTCCCGT GAGCTATACA
GATCAGAGCT GGGTACCCCT GCGCAAGCTA GATAAGTCTG AGCAGGATAC TGCGAATGCC
AATGCCAAGG CAGACACTGT GCAAGTCGAG ATCAACCAGC GCTTCGGCAG TTTGAATGAA
GTGGCTGGTG CGGTCTCGTC ATTGACCGGT CTGCCGGTCT TCGTCAGCGC AGATATTCGA
GCACTATCCG CGTCTGGGTC GGCCTCTGCC TCCCCTATGC CGGGTGCGCC ATCGCCAGGT
ATCCCAAGCA TCCCAGGCGG CCCGTTGCCA CCGACGGGGT ACTCGTCAGC CCTTGGAGCC
GGCTCCTCTG CGCCCACGGG GCCCATCACC GTCGGCTCTC CCTTTGCCGC GAATTACTCT
GGGAGTTTGT CGGGATTCAT GAACATGGTG TCGGCTTATT ACGGTGTGTT CTGGAAAACG
GAAGCCTCTG GCCTGCGGTT TTTCCAAATG GATTCGAAGA CTTTTCGAAT CGCCGCTCTG
CCGGGCGACA CACGCTTGTC AAGCACGGTC GAGGCGTCAT CAAATTCGTC GGGCGGAGGC
GCTGCTGGCC CAGGCGGCGC CGGTGGTGGG GGAGATTCAG GTAAATCAGG AAGTTCGGCA
AATTCAACTG GAGTGGCCTT CACAGGCTTA TCGGTCTGGG CTTCGCTTGA AAACGGCATC
AAGCAGATGC TGAGTGCGGG AGGCCGTGTT TACGCTTCGC CAGCAACAGG AACAATTACG
GTTACCGACA CCCCCAACGT CTTGGGACTG GTTTCGGATT TCGTCAAAAC TCAGAATCAA
GCGCTGAACA GGCAAGTTTC CGTGAACGTT CGAGTGCTCT CGGTTGCGCT TGACGACTCG
GATGACTACG GCATTAATTG GGATGCTGTC TACAAGAATC TTGCCACGGC ATCCAATGCG
TACTCTATCG CATTGAAAAC GGCCTTCCCC ATTGCCAACG GTGCTGGCAA CCTGGTGATT
TCTGCCCCGG CCACCTCTGG ATCGCGCTGG GCTGGATCGA GCGCAATGAT TTCAGCATTG
TCCAGTCAAG GGCGTGTAAC TGAACTTACT TCATCCACGC TTGTAACACT GAACAATCAA
CCTTCCCCGG TCAACGTCGG CCGGCGAGTT TCATATCTGC AATCAAGCTC GACAACGCAA
ACTGCCAATG TCGGGTCGAC TAGTTCTCTA ACGCCGGGAA CGATTCAGAC AGGGTTTTCG
ATGACCCTGA TTCCACACAT TATTGATAGC CGTGAGATTC TTCTCCAGTA CTCGATTGAC
TTGTCTTCTC TTCTTCAATT GACCACGATT TCATCGGGCA CCAGTTCCAT CCAGGCGCCG
GACATCTCAA CAAGCAACTT CATCCAACGT GTGAAGCTTC TGTCGGGTGA AACACTCGTT
GTTGCAGGTT TTGACCAGGA TAACTTGTCT GCGGTGTCCA ACGGAGTCGG CGCTGCCGAC
AACGTCGCGC TAGGAAGCCG CAACGGCTCG AAGAAACGCA ACATGATCGT TGTGATGATT
CAGCCAAATC TTGCGCAGTG A
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| Protein sequence | MIMKYTPITL AVAASLLAGC ATGPADNAAI KIKVEATRAE AQRLISSRET PVEASPVSYT
DQSWVPLRKL DKSEQDTANA NAKADTVQVE INQRFGSLNE VAGAVSSLTG LPVFVSADIR
ALSASGSASA SPMPGAPSPG IPSIPGGPLP PTGYSSALGA GSSAPTGPIT VGSPFAANYS
GSLSGFMNMV SAYYGVFWKT EASGLRFFQM DSKTFRIAAL PGDTRLSSTV EASSNSSGGG
AAGPGGAGGG GDSGKSGSSA NSTGVAFTGL SVWASLENGI KQMLSAGGRV YASPATGTIT
VTDTPNVLGL VSDFVKTQNQ ALNRQVSVNV RVLSVALDDS DDYGINWDAV YKNLATASNA
YSIALKTAFP IANGAGNLVI SAPATSGSRW AGSSAMISAL SSQGRVTELT SSTLVTLNNQ
PSPVNVGRRV SYLQSSSTTQ TANVGSTSSL TPGTIQTGFS MTLIPHIIDS REILLQYSID
LSSLLQLTTI SSGTSSIQAP DISTSNFIQR VKLLSGETLV VAGFDQDNLS AVSNGVGAAD
NVALGSRNGS KKRNMIVVMI QPNLAQ
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