| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5171 |
|---|
| Symbol | |
|---|
| ID | 4016015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007949 |
|---|
| Strand | + |
|---|
| Start bp | 279116 |
|---|
| End bp | 279661 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637944803 |
|---|
| Product | alkylhydroperoxidase AhpD core |
|---|
| Protein accession | YP_551935 |
|---|
| Protein GI | 91790984 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.428742 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGAA CTGCAGCTCT AAAGCCAGAA CAGGTGCCGG CTGATTCGAA ACCGACTCTC
GATATGTTCA CCAAGAACAT CGGATTCACC CCAAACATGA TGGCGACTTT CGCGCAGAGC
CCGATCGCGT TCAACGCATG GGCCACCTTG CTCGGCTCCT TGAGCAAGGC GCTCGACGTG
AAAACACGTG ACAGCATCGG CCTCGCTGTC TCCGAAGTGA ATGGTTGCAA CTACTGCCTG
ATGGTTCACA GCTATACGGC CGAGCATATG GCCAGGCTGC CGGCCGATGA AATCATTCTC
GCTCGGAAGG GCCATGCCAC CGACCCGAAA CGAGATGCCG CCGTGCAGTT TGCGCGCAAA
GTCATTGAGG CCCGCGGCCA GGTTAGCGAC GCCGATCTGA AAATCGTCCG CGATGCTGGT
TACACGGATG CGAACATCAT GGAGATCGTC GCGCTGGTGG CCATGTACTC CCTGACTAAT
TTTATCAATA ACGTGTTCGA TCCCGAGAAG GACTTCCCCG CCGTTACACC GGCTGGCGCG
ATCTGA
|
|---|
| Protein sequence | MTRTAALKPE QVPADSKPTL DMFTKNIGFT PNMMATFAQS PIAFNAWATL LGSLSKALDV
KTRDSIGLAV SEVNGCNYCL MVHSYTAEHM ARLPADEIIL ARKGHATDPK RDAAVQFARK
VIEARGQVSD ADLKIVRDAG YTDANIMEIV ALVAMYSLTN FINNVFDPEK DFPAVTPAGA
I
|
|---|
| |